Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ECA0911Putative exported protein; Similar to Fusobacterium nucleatum hypothetical protein Fn0656 SWALL:Q8RFN5 (EMBL:AE010576) (126 aa) fasta scores: E(): 0.065, 32.14% id in 112 aa, and to Methanosarcina acetivorans na+-transporting NADH:ubiquinone oxidoreductase, subunit 3 Nqr3 or ma0661 SWALL:Q8TSY2 (EMBL:AE010727) (188 aa) fasta scores: E(): 5.6, 31.64% id in 79 aa. (115 aa)    
Predicted Functional Partners:
ECA0910
Similar to Shewanella frigidimarina fumarate reductase flavoprotein subunit precursor FccA or Fcc3 SWALL:FRDA_SHEFR (SWALL:Q02469) (596 aa) fasta scores: E(): 1e-20, 27.82% id in 496 aa, and to Shewanella oneidensis fumarate reductase flavoprotein subunit precursor so0970 SWALL:FRDA_SHEON (SWALL:P83223) (596 aa) fasta scores: E(): 1.7e-17, 29.27% id in 485 aa, and to Rhodococcus erythropolis 3-ketosteroid 1-dehydrogenase KstD2 SWALL:Q8RLT5 (EMBL:AY078169) (565 aa) fasta scores: E(): 5e-10, 28.73% id in 341 aa.
 
  
  0.788
ECA2794
Putative exported protein; Similar to Thermoanaerobacter tengcongensis major membrane immunogen tte2480 SWALL:Q8R7D5 (EMBL:AE013189) (138 aa) fasta scores: E(): 0.61, 35% id in 140 aa, and to Clostridium acetobutylicum uncharacterized conserved protein cac2767 SWALL:Q97FH2 (EMBL:AE007774) (133 aa) fasta scores: E(): 0.0033, 31.86% id in 91 aa.
 
  
  0.763
fumA
Fumarate hydratase class I, aerobic; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.
     
 0.655
ECA0912
Similar to Yersinia pestis putative membrane transport protein ypo0009 SWALL:Q8ZJS7 (EMBL:AJ414141) (474 aa) fasta scores: E(): 7.2e-49, 33.76% id in 459 aa, and to Escherichia coli hypothetical transport protein YieO SWALL:YIEO_ECOLI (SWALL:P31474) (475 aa) fasta scores: E(): 6.1e-48, 32.59% id in 451 aa.
       0.602
ECA0913
Putative component of polysulfide reductase; Similar to Escherichia coli NfrD protein NrfD or b4073 SWALL:NRFD_ECOLI (SWALL:P32709) (318 aa) fasta scores: E(): 1.4e-56, 50.62% id in 322 aa. Also similar to ECA1878 (50.784% id. in 319 aa overlap).
       0.601
ECA0914
Putative component of polysulfide reductase; Similar to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri NrfC protein precursor nrfc or b4072 or z5671 or ecs5054 or sf4132 SWALL:NRFC_ECOLI (SWALL:P32708) (223 aa) fasta scores: E(): 7.3e-49, 58.66% id in 225 aa. Also similar to ECA1877 (56.444% id. in 225 aa overlap).
       0.601
ECA1969
Putative NADH:flavin oxidoreductase; The C-terminal region of this CDS is similar to Shewanella frigidimarina fumarate reductase flavoprotein subunit precursor FccA or Fcc3 SWALL:FRDA_SHEFR (SWALL:Q02469) (596 aa) fasta scores: E(): 2.7e-64, 43.72% id in 462 aa, and to Staphylococcus epidermidis putative NADH-dependent flavin oxidoreductase se0195 SWALL:AAO03792 (EMBL:AE016744) (1005 aa) fasta scores: E(): 2.2e-69, 38.82% id in 1007 aa.
 
  
  0.407
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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