Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
ECA0919Probable transport protein; Similar to Salmonella typhi putative membrane transport protein sty1554 SWALL:Q8Z6Z5 (EMBL:AL627270) (459 aa) fasta scores: E(): 4e-141, 81.69% id in 448 aa, and to Escherichia coli hypothetical metabolite transport protein YdfJ SWALL:YDFJ_ECOLI (SWALL:P77228) (427 aa) fasta scores: E(): 1.1e-67, 80.09% id in 422 aa. (457 aa)    
Predicted Functional Partners:
ECA0920
Probable carbohydrate oxidoreductase; Similar to Escherichia coli D-mannonate oxidoreductase UxuB or b4323 SWALL:UXUB_ECOLI (SWALL:P39160) (486 aa) fasta scores: E(): 1.5e-102, 54.83% id in 476 aa, and to Escherichia coli hypothetical oxidoreductase ydfi or b1542 SWALL:YDFI_ECOLI (SWALL:P77260) (486 aa) fasta scores: E(): 1.2e-127, 65.26% id in 475 aa. Also similar to ECA0819 (UxuB) (54.906% id. in 479 aa overlap); Belongs to the mannitol dehydrogenase family.
  
    0.529
ECA0921
GntR-family transcriptional regulator; Similar to Escherichia coli, and Escherichia coli O157:H7 hypothetical transcriptional regulator YdfH SWALL:YDFH_ECOLI (SWALL:P77577) (228 aa) fasta scores: E(): 2e-51, 60.88% id in 225 aa, and to Salmonella typhimurium, and Salmonella typhi putative regulatory protein, GntR-family stm1510 or sty1551 SWALL:Q8XFZ6 (EMBL:AE008766) (228 aa) fasta scores: E(): 2.3e-50, 60% id in 225 aa.
 
     0.465
rspB
Putative starvation sensing zinc-binding dehydrogenase; Similar to Escherichia coli starvation sensing protein RspB or b1580 SWALL:RSPB_ECOLI (SWALL:P38105) (339 aa) fasta scores: E(): 5.6e-94, 73.45% id in 339 aa.
  
    0.405
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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