STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA0927TonB-dependent receptor; Similar to Escherichia coli probable TonB-dependent receptor yncd precursor yncd or b1451 SWALL:YNCD_ECOLI (SWALL:P76115) (700 aa) fasta scores: E(): 9e-12, 22.77% id in 751 aa, and to Caulobacter crescentus TonB-dependent receptor cc3436 SWALL:Q9A2X0 (EMBL:AE006003) (800 aa) fasta scores: E(): 4.1e-16, 25.64% id in 772 aa. (746 aa)    
Predicted Functional Partners:
ECA0928
TonB-like protein; Similar to Salmonella typhimurium TonB protein SWALL:TONB_SALTY (SWALL:P25945) (242 aa) fasta scores: E(): 6.8e-09, 35.93% id in 192 aa, and to Escherichia coli TonB protein SWALL:TONB_ECOLI (SWALL:P02929) (239 aa) fasta scores: E(): 6.5e-07, 37.91% id in 182 aa.
 
 
 0.791
ECA3565
TonB dependent receptor; Similar to Yersinia enterocolitica ferrichrome receptor FcuA precursor fcuA SWALL:FCUA_YEREN (SWALL:Q05202) (758 aa) fasta scores: E(): 2.8e-42, 29.09% id in 787 aa, and to Escherichia coli O6 hypothetical protein c0294 or c2518 SWALL:AAN80973 (EMBL:AE016755) (721 aa) fasta scores: E(): 1.5e-160, 57.22% id in 720 aa.
  
  
 0.745
ECA0929
Biopolymer transport protein; Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri biopolymer transport ExbD protein or b3005 or c3740 or z4358 or ecs3889 or sf3050 SWALL:EXBD_ECOLI (SWALL:P18784) (141 aa) fasta scores: E(): 6.4e-07, 29.85% id in 134 aa, and to Anabaena sp. hypothetical protein All5046 all5046 SWALL:Q8YM90 (EMBL:AP003598) (134 aa) fasta scores: E(): 1.2e-08, 33.58% id in 134 aa.
  
  
 0.663
ECA0059
TonB-like protein; Similar to Yersinia pestis putative membrane protein ypo3918 SWALL:Q8ZA93 (EMBL:AJ414159) (267 aa) fasta scores: E(): 1.7e-17, 34.7% id in 268 aa, and to Shigella flexneri, and Escherichia coli CjrB SWALL:Q933Q6 (EMBL:AF283292) (258 aa) fasta scores: E(): 7.9e-14, 30.59% id in 268 aa, and to Pseudomonas putida TonB SWALL:Q93PQ7 (EMBL:AF315582) (243 aa) fasta scores: E(): 1.5e-10, 31.74% id in 252 aa.
 
 
 0.590
ECA1272
TonB-like protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
 
 
 0.581
ECA4115
Similar to Ralstonia solanacearum probable ferric siderophore receptor protein rsp0414 or rs00871 SWALL:Q8XSQ3 (EMBL:AL646078) (746 aa) fasta scores: E(): 2.3e-136, 51.09% id in 734 aa, and to Vibrio anguillarum ferric anguibactin receptor precursor fatA SWALL:FATA_VIBAN (SWALL:P11461) (726 aa) fasta scores: E(): 3.5e-79, 35.45% id in 722 aa.
  
  
 0.577
ECA1275
Similar to Anabaena sp. ferrichrome-iron receptor all2610 SWALL:Q8YTV3 (EMBL:AP003590) (857 aa) fasta scores: E(): 3.4e-38, 27.33% id in 684 aa, and to Pseudomonas putida outer membrane ferric siderophore receptor, putative pp3155 SWALL:AAN68763 (EMBL:AE016785) (709 aa) fasta scores: E(): 2.2e-29, 27.35% id in 691 aa.
  
  
 0.520
ECA0926
Putative biopolymer transport protein; Similar to Plesiomonas shigelloides ExbB SWALL:Q93SS5 (EMBL:AY008342) (269 aa) fasta scores: E(): 5.9e-08, 40.49% id in 121 aa, and to Vibrio vulnificus biopolymer transport protein vv21613 SWALL:AAO08472 (EMBL:AE016813) (230 aa) fasta scores: E(): 9.2e-07, 27.75% id in 209 aa.
  
  
 0.514
fcuA
Putative ferric siderophore TonB-dependent receptor; Similar to Yersinia enterocolitica ferrichrome receptor FcuA precursor FcuA SWALL:FCUA_YEREN (SWALL:Q05202) (758 aa) fasta scores: E(): 2.6e-175, 59.78% id in 756 aa, and to Bordetella bronchiseptica putative ferric siderophore receptor BfrB SWALL:P94265 (EMBL:U77671) (734 aa) fasta scores: E(): 1.2e-99, 39.86% id in 725 aa.
  
     0.500
sftP
TonB-dependent receptor; Similar to Pseudomonas putida SftP SWALL:Q9R9W7 (EMBL:AF126201) (778 aa) fasta scores: E(): 5e-33, 37.71% id in 753 aa, and to Xanthomonas axonopodis TonB-dependent receptor FyuA or xac1143 SWALL:Q8PND0 (EMBL:AE011742) (804 aa) fasta scores: E(): 1.7e-22, 23.65% id in 782 aa.
  
   
 0.469
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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