STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA0930Probable permease; Similar to Salmonella typhimurium putative permease stm0382 SWALL:Q8ZRF1 (EMBL:AE008713) (403 aa) fasta scores: E(): 4.6e-107, 71.89% id in 395 aa, and to Escherichia coli hypothetical transport protein ycee ycee or b1053 SWALL:YCEE_ECOLI (SWALL:P25744) (408 aa) fasta scores: E(): 2.2e-89, 60.61% id in 391 aa. (397 aa)    
Predicted Functional Partners:
ECA1265
Similar to Yersinia pestis putative membrane protein ypo3057 SWALL:Q8ZCD4 (EMBL:AJ414155) (150 aa) fasta scores: E(): 5.6e-44, 83.33% id in 150 aa, and to Salmonella typhi putative membrane protein sty1838 SWALL:Q8Z6E5 (EMBL:AL627271) (148 aa) fasta scores: E(): 1.7e-36, 71.03% id in 145 aa.
  
     0.442
ECA0929
Biopolymer transport protein; Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri biopolymer transport ExbD protein or b3005 or c3740 or z4358 or ecs3889 or sf3050 SWALL:EXBD_ECOLI (SWALL:P18784) (141 aa) fasta scores: E(): 6.4e-07, 29.85% id in 134 aa, and to Anabaena sp. hypothetical protein All5046 all5046 SWALL:Q8YM90 (EMBL:AP003598) (134 aa) fasta scores: E(): 1.2e-08, 33.58% id in 134 aa.
   
   0.409
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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