STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA0934Putative acetyltransferase; Similar to Erwinia amylovora orf 12 SWALL:Q46650 (EMBL:L25828) (139 aa) fasta scores: E(): 5.3e-17, 43.7% id in 135 aa, and to Enterobacter aerogenes putative acetyltransferase Act SWALL:CAD48860 (EMBL:AJ508047) (138 aa) fasta scores: E(): 9.8e-17, 41.91% id in 136 aa, and to Salmonella typhimurium putative acetyltransferase stm1857 SWALL:Q8ZNY6 (EMBL:AE008782) (139 aa) fasta scores: E(): 4.4e-13, 40.28% id in 139 aa. (137 aa)    
Predicted Functional Partners:
ECA0933
LuxR-family transcriptional regulator; Similar to Photorhabdus luminescens Orf66 SWALL:AAO17220 (EMBL:AF346500) (227 aa) fasta scores: E(): 8.7e-29, 36.01% id in 211 aa, and to Vibrio cholerae transcriptional regulator, LuxR family vca1078 SWALL:Q9KKM5 (EMBL:AE004433) (319 aa) fasta scores: E(): 1.7e-06, 26.63% id in 214 aa.
       0.682
ECA0932
Permease; Similar to Escherichia coli, and Escherichia coli O6 cytosine permease CodB or b0336 or c0455 SWALL:CODB_ECOLI (SWALL:P25525) (419 aa) fasta scores: E(): 5.8e-25, 28.73% id in 428 aa, and to Streptomyces coelicolor putative cytosine permease sco0572 or sc5g5.04C SWALL:Q93RZ8 (EMBL:AL939106) (466 aa) fasta scores: E(): 2.4e-55, 40.19% id in 413 aa.
       0.678
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
Server load: low (40%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.