STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA0938Putative membrane protein; Similar to Salmonella typhimurium, and Salmonella typhi putative inner membrane protein ydgk or stm1458 or stm1460 or sty1662 SWALL:Q8XEX0 (EMBL:AE008763) (146 aa) fasta scores: E(): 0.56, 21.67% id in 143 aa. (163 aa)    
Predicted Functional Partners:
arcB
Similar to Escherichia coli, and Shigella flexneri aerobic respiration control sensor protein ArcB or b3210 or sf3250 SWALL:ARCB_ECOLI (SWALL:P22763) (778 aa) fasta scores: E(): 8.6e-180, 75.88% id in 788 aa, and to Yersinia pestis aerobic respiration control sensor/response regulatory protein ArcB SWALL:Q8ZB69 (EMBL:AJ414157) (778 aa) fasta scores: E(): 3.6e-190, 80.71% id in 788 aa.
   
 0.961
ECA3886
Putative membrane protein; Similar to the C-terminal region of many including Pseudomonas aeruginosa hypothetical protein Pa2870 SWALL:Q9HZX6 (EMBL:AE004713) (525 aa) fasta scores: E(): 1.9e-17, 39.39% id in 165 aa, and to Shewanella oneidensis ggdef domain protein so4457 SWALL:AAN57422 (EMBL:AE015878) (485 aa) fasta scores: E(): 2.1e-17, 39.03% id in 187 aa.
  
 
 0.742
rpfA
Two-component sensor kinase and response regulator; Similar to Pectobacterium carotovorum subsp. carotovorum sensor/regulator protein RpfA SWALL:O08235 (EMBL:U62023) (929 aa) fasta scores: E(): 0, 92.88% id in 928 aa, and to Pectobacterium carotovorum subsp. carotovorum sensory kinase ExpS SWALL:O32556 (EMBL:Y13670) (928 aa) fasta scores: E(): 0, 95.36% id in 928 aa.
   
 0.728
ECA0705
Partial CDS. Similar to an internal region of Agrobacterium tumefaciens non-ribosomal peptide synthetase MtaD or atu3682 or agr_l_2311 SWALL:Q8U9P4 (EMBL:AE009297) (2399 aa) fasta scores: E(): 0.00074, 32.99% id in 97 aa, and to Anabaena sp. peptide synthetase all2648 SWALL:Q8YTR5 (EMBL:AP003590) (2588 aa) fasta scores: E(): 0.0032, 34.4% id in 93 aa.
  
  
 0.607
rnfA
Electron transport complex protein; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane.
  
    0.508
hrpX
Two-component sensor kinase; Similar to Erwinia chrysanthemi HrpX SWALL:Q8KUM4 (EMBL:AF448202) (450 aa) fasta scores: E(): 3.4e-115, 68.25% id in 441 aa, and to Erwinia amylovora sensor kinase HrpX SWALL:Q9X3S8 (EMBL:AF083877) (494 aa) fasta scores: E(): 9.5e-100, 56.13% id in 481 aa.
  
 
 0.498
ECA0937
Putative transport protein; Similar to Pseudomonas putida major facilitator family transporter pp4758 SWALL:AAN70328 (EMBL:AE016791) (455 aa) fasta scores: E(): 2.5e-78, 48.75% id in 441 aa, and to Agrobacterium vitis putative tartrate transporter ttuB SWALL:TUB4_AGRVI (SWALL:Q44470) (433 aa) fasta scores: E(): 3.3e-58, 39.57% id in 427 aa.
  
    0.485
hrpQ
Type III secretion protein; Similar to Erwinia amylovora HrpQ SWALL:Q46641 (EMBL:L25828) (310 aa) fasta scores: E(): 3.4e-50, 48.89% id in 317 aa, and to Pantoea agglomerans HrpQ protein HrpQ SWALL:Q937I4 (EMBL:X99768) (307 aa) fasta scores: E(): 4.9e-47, 46.96% id in 313 aa.
   
 
 0.476
ECA2105
Type III secretion protein; Weakly similar to Xanthomonas oryzae HrpG SWALL:Q938P2 (EMBL:AY049753) (263 aa) fasta scores: E(): 8, 28.07% id in 114 aa, and to Vibrio cholerae hypothetical protein Vc1417 SWALL:Q9KS44 (EMBL:AE004220) (286 aa) fasta scores: E(): 1.1e-07, 26.29% id in 251 aa.
   
 
 0.476
ECA3423
Hypothetical protein; No significant database matches.
   
 
 0.476
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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