STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA0949Putative membrane protein; Similar to Xanthomonas axonopodis hypothetical protein xac4298 SWALL:Q8PEP7 (EMBL:AE012083) (259 aa) fasta scores: E(): 3.4e-42, 45.2% id in 250 aa, and to Pseudomonas putida conserved hypothetical protein pp3933 SWALL:AAN69527 (EMBL:AE016788) (253 aa) fasta scores: E(): 3.7e-39, 42.57% id in 249 aa. (254 aa)    
Predicted Functional Partners:
ECA0948
Similar to Salmonella typhi putative exported protein sty4152 or t3869 SWALL:Q8Z2B0 (EMBL:AL627281) (179 aa) fasta scores: E(): 3.3e-45, 68.78% id in 173 aa, and to Yersinia pestis putative exported protein ypo1003 or y3395 SWALL:AAM86945 (EMBL:AJ414145) (195 aa) fasta scores: E(): 6e-43, 68.86% id in 167 aa.
 
     0.519
ECA0950
Similar to Pseudomonas aeruginosa probable transcriptional regulator pa1226 SWALL:Q9I4B2 (EMBL:AE004552) (202 aa) fasta scores: E(): 1.3e-38, 56.54% id in 191 aa, and to Rhizobium meliloti putative transcriptional regulator ra0119 SWALL:Q930S6 (EMBL:AE007206) (204 aa) fasta scores: E(): 9.3e-36, 52.88% id in 191 aa.
       0.402
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
Server load: low (38%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.