STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA0955Similar to Xanthobacter flavus rubisco operon transcriptional regulator CbbR or CfxO SWALL:CBBR_XANFL (SWALL:P25545) (333 aa) fasta scores: E(): 8.9e-19, 30.3% id in 297 aa, and to Agrobacterium tumefaciens transcriptional regulator, LysR family OxyR or atu0873 or agr_c_1597 SWALL:Q8UH12 (EMBL:AE009053) (316 aa) fasta scores: E(): 5.3e-39, 43.88% id in 278 aa; Belongs to the LysR transcriptional regulatory family. (299 aa)    
Predicted Functional Partners:
ECA2642
Similar to Pseudomonas putida transcriptional regulator, LysR family pp4522 SWALL:AAN70096 (EMBL:AE016791) (297 aa) fasta scores: E(): 5.6e-24, 29.64% id in 280 aa, and to Rhizobium loti transcriptional regulator mlr6990 SWALL:Q987M7 (EMBL:AP003010) (299 aa) fasta scores: E(): 4.7e-18, 30.45% id in 266 aa; Belongs to the LysR transcriptional regulatory family.
  
     0.735
ECA1965
Similar to Pseudomonas aeruginosa probable transcriptional regulator pa5179 SWALL:Q9HU10 (EMBL:AE004931) (293 aa) fasta scores: E(): 4.3e-38, 41.33% id in 300 aa, and to Pseudomonas putida transcriptional regulator, LysR family pp4601 SWALL:AAN70174 (EMBL:AE016791) (295 aa) fasta scores: E(): 2e-34, 37.91% id in 298 aa; Belongs to the LysR transcriptional regulatory family.
  
     0.724
ECA1482
Similar to Rhizobium loti transcriptional regulator mlr0648 SWALL:Q98MB4 (EMBL:AP002995) (311 aa) fasta scores: E(): 4.8e-28, 31.95% id in 291 aa, and to Pseudomonas aeruginosa probable transcriptional regulator pa1328 SWALL:Q9I416 (EMBL:AE004562) (302 aa) fasta scores: E(): 3.5e-27, 34.72% id in 288 aa; Belongs to the LysR transcriptional regulatory family.
  
     0.701
ECA3634
Similar to Brucella melitensis transcriptional regulatory protein, LysR family bmeii1135 SWALL:Q8YAW6 (EMBL:AE009745) (297 aa) fasta scores: E(): 5.1e-26, 30.66% id in 287 aa, and to Rhizobium meliloti putative transcription regulator protein r02876 or smc02984 SWALL:Q92LY6 (EMBL:AL591792) (297 aa) fasta scores: E(): 2.4e-28, 33.33% id in 288 aa.
  
     0.692
ECA0905
Similar to Yersinia pestis putative LysR-family transcriptional regulatory protein ypo2979 SWALL:Q8ZCK5 (EMBL:AJ414154) (292 aa) fasta scores: E(): 1.7e-70, 64.08% id in 284 aa, and to Salmonella typhi possible regulatory protein sty3165 SWALL:Q8Z3Z7 (EMBL:AL627277) (287 aa) fasta scores: E(): 3.8e-56, 55.35% id in 280 aa.
  
     0.647
ECA0737
Similar to Pseudomonas aeruginosa probable transcriptional regulator pa2534 SWALL:Q9I0V0 (EMBL:AE004681) (303 aa) fasta scores: E(): 9.2e-53, 51.16% id in 301 aa; Belongs to the LysR transcriptional regulatory family.
  
     0.616
ECA0957
Putative membrane protein; Similar to Bradyrhizobium japonicum MFS permease bll5460 SWALL:BAC50725 (EMBL:AP005955) (416 aa) fasta scores: E(): 2.7e-31, 31.23% id in 397 aa, and to Agrobacterium tumefaciens MFS permease atu0960 or agr_c_1756 SWALL:Q8UGS5 (EMBL:AE009060) (427 aa) fasta scores: E(): 9e-27, 31.8% id in 393 aa.
 
     0.615
ECA2848
Similar to Yersinia pestis LysR-family transcriptional regulatory protein ypo0799 or y3187 SWALL:Q8ZHT5 (EMBL:AJ414144) (302 aa) fasta scores: E(): 1.6e-51, 45.81% id in 299 aa, and to Pseudomonas aeruginosa probable transcriptional regulator pa0056 SWALL:Q9I776 (EMBL:AE004445) (306 aa) fasta scores: E(): 2.2e-53, 46.33% id in 300 aa.
  
     0.611
ECA2973
LysR-family transcriptional regulator; Similar to Rhizobium meliloti putative transcription regulator protein r02971 or smc03122 SWALL:Q92LQ9 (EMBL:AL591792) (315 aa) fasta scores: E(): 2.5e-28, 35.31% id in 286 aa, and to Brucella suis transcriptional regulator, LysR family bra0952 SWALL:AAN34123 (EMBL:AE014588) (304 aa) fasta scores: E(): 2e-27, 31.29% id in 294 aa; Belongs to the LysR transcriptional regulatory family.
  
     0.598
ECA1978
Similar to Rhizobium loti probable transcriptional regulator mll2472 SWALL:Q98IC0 (EMBL:AP002999) (298 aa) fasta scores: E(): 3.8e-61, 58.9% id in 292 aa, and to Xanthomonas campestris transcriptional regulator xcc4174 SWALL:Q8P3A2 (EMBL:AE012543) (303 aa) fasta scores: E(): 2.1e-60, 57.14% id in 294 aa; Belongs to the LysR transcriptional regulatory family.
  
     0.593
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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