Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ECA0959Putative acetyltransferase; Similar to Salmonella typhi hypothetical protein Sty4668 SWALL:Q8Z1C2 (EMBL:AL627283) (162 aa) fasta scores: E(): 2.2e-45, 89.05% id in 137 aa, and to Salmonella typhimurium putative acetyltransferase stm4318 SWALL:Q8ZKC6 (EMBL:AE008902) (163 aa) fasta scores: E(): 2.7e-43, 84.28% id in 140 aa. (139 aa)    
Predicted Functional Partners:
ECA0958
Similar to Salmonella typhi hypothetical protein Sty4517 SWALL:Q8Z1M5 (EMBL:AL627282) (97 aa) fasta scores: E(): 3.4e-31, 89.69% id in 97 aa, and to Xanthomonas campestris hypothetical protein Xcc3104 SWALL:Q8P668 (EMBL:AE012426) (96 aa) fasta scores: E(): 2.5e-23, 72.63% id in 95 aa.
 
 
   0.930
mcK
Putative plasmid-related protein; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family.
  
     0.680
mvpA
Putative plasmid protein; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family.
  
     0.674
mvpT
Putative plasmid protein; Similar to Shigella flexneri MvpT protein SWALL:CAC05863 (EMBL:AL391753) (75 aa) fasta scores: E(): 8e-18, 68.91% id in 74 aa, and to Salmonella dublin virulence-associated protein VagC SWALL:VAGC_SALDU (SWALL:Q05459) (76 aa) fasta scores: E(): 0.0048, 31.81% id in 66 aa.
  
     0.592
gltB
Similar to Escherichia coli glutamate synthase [NADPH] large chain precursor GltB or AspB SWALL:GLTB_ECOLI (SWALL:P09831) (1517 aa) fasta scores: E(): 0, 86.75% id in 1495 aa, and to Yersinia pestis glutamate synthase, large subunit GltB SWALL:AAM83722 (EMBL:AE013613) (1535 aa) fasta scores: E(): 0, 90.25% id in 1498 aa.
     
  0.563
argA
Amino-acid acetyltransferase; Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 amino-acid acetyltransferase ArgA or b2818 or c3412 or z4135 or ecs3675 SWALL:ARGA_ECOLI (SWALL:P08205) (443 aa) fasta scores: E(): 1.7e-149, 85.26% id in 441 aa, and to Yersinia pestis amino-acid acetyltransferase ArgA or ypo1022 or y3162 SWALL:Q8ZH86 (EMBL:AJ414146) (441 aa) fasta scores: E(): 1.5e-152, 88.43% id in 441 aa; Belongs to the acetyltransferase family. ArgA subfamily.
    
 0.441
ECA4501
Similar to Escherichia coli O157:H7 putative enzyme z4856 or ecs4331 SWALL:Q8X6M3 (EMBL:AE005571) (453 aa) fasta scores: E(): 3.5e-72, 46.3% id in 447 aa, and to Vibrio vulnificus acyl-coenzyme A synthetase vv10050 SWALL:Q8DG01 (EMBL:AE016797) (455 aa) fasta scores: E(): 9.7e-48, 37.86% id in 441 aa.
  
 
 0.440
ECA0367
Putative DNA-binding protein; Similar to Escherichia coli O6 hypothetical protein YgjM c3273 SWALL:AAN81722 (EMBL:AE016765) (139 aa) fasta scores: E(): 1.1e-21, 50% id in 134 aa.
  
     0.420
ECA0582
Putative plasmid-related protein; Similar to Escherichia coli PemK protein pemK SWALL:PEMK_ECOLI (SWALL:P13976) (133 aa) fasta scores: E(): 3e-07, 33.33% id in 111 aa, and to Plasmid R100 plasmid stable inheritance protein pemK SWALL:BAA78898 (EMBL:AP000342) (133 aa) fasta scores: E(): 3e-07, 33.33% id in 111 aa.
 
     0.416
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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