STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA0960Putative restriction enzyme; Similar to Pseudomonas putida hypothetical protein Pp3692 SWALL:AAN69289 (EMBL:AE016787) (891 aa) fasta scores: E(): 2.6e-122, 40.84% id in 857 aa, and weakly similar to Campylobacter jejuni RloG SWALL:Q8RJJ2 (EMBL:AF486547) (797 aa) fasta scores: E(): 0.034, 20.58% id in 850 aa, and to Campylobacter jejuni RloE SWALL:Q8RN16 (EMBL:AF486555) (800 aa) fasta scores: E(): 0.12, 21.43% id in 849 aa. (868 aa)    
Predicted Functional Partners:
ECA2026
Putative exported protein; Similar to Pseudomonas aeruginosa hypothetical protein Pa4390 SWALL:Q9HW14 (EMBL:AE004854) (335 aa) fasta scores: E(): 2.8e-59, 43.23% id in 340 aa, and to Pseudomonas putida conserved hypothetical protein pp1357 SWALL:AAN66980 (EMBL:AE016779) (375 aa) fasta scores: E(): 6.3e-60, 44.97% id in 338 aa.
  
     0.551
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.