STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA0964Putative regulatory protein; Similar to Rhizobium loti hypothetical protein Msr0960 SWALL:Q98LM9 (EMBL:AP002996) (83 aa) fasta scores: E(): 2.2e-07, 43.47% id in 69 aa, and to Leptospira interrogans predicted transcriptional regulator la0511 SWALL:AAN47710 (EMBL:AE011237) (98 aa) fasta scores: E(): 1.5e-05, 45.9% id in 61 aa. (82 aa)    
Predicted Functional Partners:
ccdA2
Cytotoxic protein (pseudogene); Pseudogene. This CDS appears to have a frameshift mutation. Similar to Escherichia coli, and Escherichia coli O157:H7 cytotoxic protein CcdB or LetB or protein G SWALL:CCDB_ECOLI (SWALL:P05703) (101 aa) fasta scores: E(): 5.9e-06, 44.06% id in 59 aa, and to Shigella flexneri CcdB protein SWALL:Q9AJV2 (EMBL:AL391753) (108 aa) fasta scores: E(): 8.7e-06, 42.37% id in 59 aa.
       0.746
ECA0965
Putative regulatory protein; Similar to Leptospira interrogans predicted transcriptional regulator la2845 SWALL:AAN50044 (EMBL:AE011449) (98 aa) fasta scores: E(): 6.8e-06, 50.82% id in 61 aa, and to Rhizobium loti hypothetical protein Msr0960 msr0960 SWALL:Q98LM9 (EMBL:AP002996) (83 aa) fasta scores: E(): 2.9e-07, 45.45% id in 66 aa.
 
    
0.560
ECA0966
Transcriptional regulator; Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri sugar fermentation stimulation protein B SfsB or Nlp or Sfs7 or b3188 or c3946 or z4551 or ecs4067 or sf3228 SWALL:SFSB_ECOLI (SWALL:P18837) (92 aa) fasta scores: E(): 4.3e-16, 75% id in 64 aa, and to Salmonella typhi transcriptional regulatory protein CII or sty4673 SWALL:Q8Z1B7 (EMBL:AL627283) (73 aa) fasta scores: E(): 3e-19, 79.41% id in 68 aa. Also similar to ECA0513 (91.139% id. in 79 aa overlap), and to ECA3206 (85.714% id. in 70 aa overlap), and to ECA068 [...]
       0.400
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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