STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA0970Similar to Yersinia pestis hypothetical protein ypo3839 or y0391 SWALL:Q8ZAG3 (EMBL:AJ414159) (405 aa) fasta scores: E(): 1.9e-113, 73.98% id in 396 aa, and to Rhizobium sp. hypothetical protein Y4oU precursor SWALL:Y4OU_RHISN (SWALL:P55606) (402 aa) fasta scores: E(): 2.3e-83, 54.61% id in 401 aa; Belongs to the UPF0261 family. (402 aa)    
Predicted Functional Partners:
ECA0971
Similar to Yersinia pestis hypothetical protein ypo3838 or y0392 SWALL:AAM83981 (EMBL:AJ414159) (280 aa) fasta scores: E(): 1.4e-93, 88.4% id in 276 aa, and to Rhizobium meliloti hypothetical protein ra0728 or sma1332 SWALL:Q92YY4 (EMBL:AE007260) (280 aa) fasta scores: E(): 9.5e-72, 70.07% id in 274 aa.
  
 0.999
ECA0969
Similar to Yersinia pestis putative tetr-family regulatory protein ypo3840 or y0390 SWALL:AAM83979 (EMBL:AJ414159) (228 aa) fasta scores: E(): 1.4e-33, 71.36% id in 213 aa, and to Rhizobium loti transcriptional regulator mll3386 SWALL:Q98GC7 (EMBL:AP003001) (219 aa) fasta scores: E(): 3.2e-30, 48.66% id in 187 aa.
 
   
 0.634
ECA0972
Putative exported protein; Similar to Agrobacterium tumefaciens hypothetical protein atu2436 or agr_c_4418 SWALL:Q8UCP7 (EMBL:AE009191) (348 aa) fasta scores: E(): 3e-52, 43.37% id in 332 aa, and to Caulobacter crescentus hypothetical protein Cc3039 SWALL:Q9A405 (EMBL:AE005966) (335 aa) fasta scores: E(): 5.4e-20, 29.27% id in 345 aa.
       0.421
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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