STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA0972Putative exported protein; Similar to Agrobacterium tumefaciens hypothetical protein atu2436 or agr_c_4418 SWALL:Q8UCP7 (EMBL:AE009191) (348 aa) fasta scores: E(): 3e-52, 43.37% id in 332 aa, and to Caulobacter crescentus hypothetical protein Cc3039 SWALL:Q9A405 (EMBL:AE005966) (335 aa) fasta scores: E(): 5.4e-20, 29.27% id in 345 aa. (347 aa)    
Predicted Functional Partners:
ECA0973
Similar to Agrobacterium tumefaciens transcriptional regulator, AraC family atu0248 or agr_c_425 SWALL:Q8UIP5 (EMBL:AE008997) (365 aa) fasta scores: E(): 3.7e-23, 33.14% id in 353 aa, and to Vibrio cholerae transcriptional regulator, arac/xyls family vca0926 SWALL:Q9KL23 (EMBL:AE004420) (365 aa) fasta scores: E(): 3.5e-16, 33.69% id in 368 aa.
 
     0.634
ehpR
Putative phenazine antibiotic biosynthesis protein; Required for resistance to the phenazine antibiotic.
  
     0.461
ECA0971
Similar to Yersinia pestis hypothetical protein ypo3838 or y0392 SWALL:AAM83981 (EMBL:AJ414159) (280 aa) fasta scores: E(): 1.4e-93, 88.4% id in 276 aa, and to Rhizobium meliloti hypothetical protein ra0728 or sma1332 SWALL:Q92YY4 (EMBL:AE007260) (280 aa) fasta scores: E(): 9.5e-72, 70.07% id in 274 aa.
       0.437
ECA0970
Similar to Yersinia pestis hypothetical protein ypo3839 or y0391 SWALL:Q8ZAG3 (EMBL:AJ414159) (405 aa) fasta scores: E(): 1.9e-113, 73.98% id in 396 aa, and to Rhizobium sp. hypothetical protein Y4oU precursor SWALL:Y4OU_RHISN (SWALL:P55606) (402 aa) fasta scores: E(): 2.3e-83, 54.61% id in 401 aa; Belongs to the UPF0261 family.
       0.421
ECA4385
Putative exported protein; Similar to Escherichia coli O6 hypothetical protein c4013 SWALL:AAN82453 (EMBL:AE016767) (348 aa) fasta scores: E(): 4.5e-22, 30.65% id in 323 aa.
  
     0.408
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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