STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA0979Putative exported protein; Similar to Salmonella typhimurium putative periplasmic protein yggn or stm3107 SWALL:Q8ZM42 (EMBL:AE008842) (239 aa) fasta scores: E(): 1.6e-48, 59.41% id in 239 aa, and to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 hypothetical protein yggn or b2958 or c3544 or z4303 or ecs3834 SWALL:YGGN_ECOLI (SWALL:P46143) (239 aa) fasta scores: E(): 1.8e-48, 58.99% id in 239 aa. (237 aa)    
Predicted Functional Partners:
ECA0881
Similar to Yersinia pestis putative lipoprotein ypo3026 SWALL:Q8ZCG5 (EMBL:AJ414155) (203 aa) fasta scores: E(): 3.1e-41, 57.92% id in 202 aa, and to Salmonella typhi putative lipoprotein sty2684 SWALL:Q8Z4V2 (EMBL:AL627274) (191 aa) fasta scores: E(): 3.8e-38, 56.31% id in 190 aa.
  
    0.803
ECA4404
Similar to Yersinia pestis putative lipoprotein ypo4086 or y4103 SWALL:Q8Z9V4 (EMBL:AJ414160) (112 aa) fasta scores: E(): 2.8e-19, 55.35% id in 112 aa, and to Escherichia coli, and Shigella flexneri hypothetical protein yidq precursor yidq or b3688 or sf3775 SWALL:YIDQ_ECOLI (SWALL:P31454) (110 aa) fasta scores: E(): 1.2e-15, 46.55% id in 116 aa.
  
   
 0.786
ECA4361
Similar to Yersinia pestis putative insulinase family protease ypo3991 or y3837 SWALL:AAM87382 (EMBL:AJ414160) (499 aa) fasta scores: E(): 1.5e-117, 63.56% id in 494 aa, and to Escherichia coli protein yhjj precursor yhjj or b3527 SWALL:YHJJ_ECOLI (SWALL:P37648) (498 aa) fasta scores: E(): 1.7e-106, 55.51% id in 499 aa.
  
  
 0.779
yfeE
Putative membrane protein; Similar to Yersinia pestis putative yfeabcd regulator YfeE or ypo2445 or y1891 SWALL:YFEE_YERPE (SWALL:Q56956) (184 aa) fasta scores: E(): 1.8e-48, 63.73% id in 182 aa, and to Salmonella typhimurium, and Salmonella typhi putative regulator ynib or stm1323 or sty1788 SWALL:Q8XFB7 (EMBL:AE008757) (178 aa) fasta scores: E(): 6.8e-47, 63.33% id in 180 aa.
  
     0.774
ECA2528
Similar to Yersinia pestis hypothetical protein ypo2038 or y2274 SWALL:AAM85834 (EMBL:AJ414151) (186 aa) fasta scores: E(): 2.8e-45, 67.22% id in 180 aa, and to Escherichia coli hypothetical protein ycdy or b1035 SWALL:YCDY_ECOLI (SWALL:P75915) (184 aa) fasta scores: E(): 1.1e-41, 60.42% id in 187 aa.
  
     0.774
secM
Secretion monitor precursor; Regulates secA expression by translational coupling of the secM secA operon. Translational pausing at a specific Pro residue 5 residues before the end of the protein may allow disruption of a mRNA repressor helix that normally suppresses secA translation initiation. Belongs to the SecM family.
  
     0.774
ECA4348
Similar to Yersinia pestis putative membrane protein ypo3816a or y0414 SWALL:Q8ZAI5 (EMBL:AJ414159) (90 aa) fasta scores: E(): 1.2e-22, 71.59% id in 88 aa, and to Shigella flexneri orf, conserved hypothetical protein yhhl or sf3484 SWALL:AAN44943 (EMBL:AE015356) (90 aa) fasta scores: E(): 5.6e-22, 69.41% id in 85 aa.
  
     0.774
ECA1289
Similar to Yersinia pestis putative membrane protein ypo3055 SWALL:Q8ZCD6 (EMBL:AJ414155) (64 aa) fasta scores: E(): 1.4e-19, 73.84% id in 65 aa, and to Salmonella typhimurium, and Salmonella typhi putative inner membrane protein stm2484 or sty2722 SWALL:Q8XF02 (EMBL:AE008812) (66 aa) fasta scores: E(): 5.5e-17, 66.12% id in 62 aa.
  
     0.773
ECA3332
Similar to Yersinia pestis putative exported protein ypo3410 or y0776 SWALL:Q8ZBJ9 (EMBL:AJ414157) (115 aa) fasta scores: E(): 1.6e-30, 69.29% id in 114 aa, and to Escherichia coli, and Escherichia coli O6 hypothetical protein yacc precursor yacc or b0122 or c0151 SWALL:YACC_ECOLI (SWALL:P23838) (115 aa) fasta scores: E(): 1.6e-27, 64.34% id in 115 aa.
  
     0.773
ECA2253
Putative exported protein; Similar to Yersinia pseudotuberculosis hypothetical 14.2 kDa protein orf9 SWALL:Q93AP0 (EMBL:AF418982) (124 aa) fasta scores: E(): 8.4e-19, 45.52% id in 123 aa, and to Salmonella typhimurium, and Salmonella typhi putative periplasmic protein ynfb or stm1503 or sty1560 SWALL:Q8XEU2 (EMBL:AE008765) (113 aa) fasta scores: E(): 3.1e-18, 52.52% id in 99 aa; Belongs to the UPF0482 family.
  
     0.772
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
Server load: low (40%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.