STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA0980Autotransporter; Similar to Pseudomonas fluorescens serine protease homologue PspB SWALL:Q9ZNI5 (EMBL:AB015053) (1036 aa) fasta scores: E(): 1.6e-25, 28.66% id in 1106 aa, and to Serratia marcescens extracellular serine protease precursor SWALL:PRTT_SERMA (SWALL:P29805) (1045 aa) fasta scores: E(): 1.1e-16, 25.6% id in 1082 aa. (1036 aa)    
Predicted Functional Partners:
ECA3266
Similar to Ralstonia solanacearum putative hemagglutinin/hemolysin-related protein rsp1180 or rs05070 SWALL:Q8XQP2 (EMBL:AL646083) (4106 aa) fasta scores: E(): 3.1e-134, 29.53% id in 4320 aa, and to Aeromonas salmonicida Rtx protein Asx SWALL:Q9L800 (EMBL:AF218037) (2747 aa) fasta scores: E(): 1.3e-47, 28.2% id in 2822 aa.
  
  
 0.729
prtW
Metalloprotease; Similar to Pectobacterium carotovorum subsp. carotovorum metalloprotease PrtW SWALL:Q9RB20 (EMBL:AF141295) (473 aa) fasta scores: E(): 4.7e-142, 84.51% id in 478 aa, and to Erwinia chrysanthemi secreted protease C precursor PrtC SWALL:PRTX_ERWCH (SWALL:P19144) (478 aa) fasta scores: E(): 5.8e-116, 66.03% id in 471 aa.
  
  
 0.727
mgtB
Magnesium transport ATPase; Similar to Salmonella typhimurium Mg(2+) transport ATPase MgtB or stm3763 SWALL:ATMB_SALTY (SWALL:P22036) (908 aa) fasta scores: E(): 0, 70.62% id in 909 aa.
   
 0.708
ECA1099
Large repetitive protein; Similar to Salmonella typhi protein sty2875 SWALL:Q8Z4I1 (EMBL:AL627276) (3624 aa) fasta scores: E(): 1.9e-41, 26.46% id in 3438 aa, and to Yersinia pestis putative autotransporter protein yaph or ypo1004 SWALL:Q8ZHA1 (EMBL:AJ414146) (3705 aa) fasta scores: E(): 8e-31, 23.21% id in 3584 aa.
  
 
 0.708
ECA1100
Similar to Escherichia coli O157:H7 hypothetical protein z0609 or ecs0541 SWALL:Q8XD19 (EMBL:AE005228) (1461 aa) fasta scores: E(): 1.7e-61, 34.15% id in 1253 aa, and to Salmonella typhi proline/threonine-rich protein SWALL:Q9X6M3 (EMBL:AF139831) (1605 aa) fasta scores: E(): 1e-14, 27.68% id in 1239 aa.
  
 
 0.708
ECA3750
Similar to Agrobacterium tumefaciens hypothetical protein atu4562 or agr_l_617 SWALL:Q8U792 (EMBL:AE009384) (840 aa) fasta scores: E(): 4e-114, 38.74% id in 826 aa.
  
 
 0.708
ECA0391
Putative activator or transporter protein of haemolysin-like protein; Similar to Erwinia chrysanthemi HecB precursor HecB SWALL:P94771 (EMBL:AF501263) (558 aa) fasta scores: E(): 9.6e-40, 29.33% id in 559 aa, and to Yersinia pestis putative hemolysin activator protein ypo2491 or y1696 SWALL:Q8ZDR5 (EMBL:AJ414152) (562 aa) fasta scores: E(): 8.5e-141, 63.86% id in 559 aa, and to Proteus mirabilis hemolysin activator protein precursor HpmB SWALL:HLYB_PROMI (SWALL:P16465) (561 aa) fasta scores: E(): 2.8e-26, 26.52% id in 524 aa.
  
  
 0.694
hecB
Putative hemolysin activator protein; Similar to Erwinia chrysanthemi HecB precursor HecB SWALL:P94771 (EMBL:AF501263) (558 aa) fasta scores: E(): 1e-144, 65.17% id in 537 aa, and to Proteus mirabilis hemolysin activator protein precursor HpmB SWALL:HLYB_PROMI (SWALL:P16465) (561 aa) fasta scores: E(): 6.5e-35, 27.27% id in 550 aa.
  
  
 0.694
ECA0732
Similar to Yersinia pestis putative exported protein ypo3993 SWALL:Q8ZA27 (EMBL:AJ414160) (159 aa) fasta scores: E(): 4.2e-40, 67.08% id in 158 aa.
  
  
 0.657
hrpN
Harpin; Similar to Pectobacterium carotovorum subsp. carotovorum HrpN SWALL:Q93FY8 (EMBL:AF302656) (356 aa) fasta scores: E(): 4e-79, 91.37% id in 371 aa, and to Erwinia carotovora harpin hrpN SWALL:HRPN_ERWCA (SWALL:Q47279) (356 aa) fasta scores: E(): 2.2e-78, 90.83% id in 371 aa.
  
  
 0.657
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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