Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
tasPutative aldo/keto reductase-family protein; Similar to Escherichia coli, and Shigella flexneri Tas protein or b2834 or sf2844 SWALL:TAS_ECOLI (SWALL:Q46933) (346 aa) fasta scores: E(): 1.5e-102, 74.5% id in 353 aa, and to Yersinia pestis putative aldo/keto reductase-family protein Tas or ypo0790 or y3177 SWALL:Q8ZHU4 (EMBL:AJ414144) (346 aa) fasta scores: E(): 1.9e-113, 82.43% id in 353 aa. (353 aa)    
Predicted Functional Partners:
ECA0982
Putative lipoprotein; Similar to Salmonella typhimurium putative Pot family, peptide transport protein ygdr or stm3007 SWALL:Q8ZMA7 (EMBL:AE008838) (72 aa) fasta scores: E(): 5.8e-14, 61.11% id in 72 aa, and to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri hypothetical lipoprotein ygdr precursor ygdr or b2833 or c3428 or z4151 or ecs3690 or sf2843 SWALL:AAN81873 (EMBL:U29581) (72 aa) fasta scores: E(): 3.6e-13, 59.72% id in 72 aa.
  
  
 0.637
dkgA
Similar to Escherichia coli 2,5-diketo-D-gluconic acid reductase A DkgA or b3012 SWALL:DKGA_ECOLI (SWALL:Q46857) (275 aa) fasta scores: E(): 1e-80, 72.42% id in 272 aa. In Salmonella typhi this is a putative pseudogene but it is apparently intact here.
 
 0.616
ECA2346
Similar to Salmonella typhi putative oxidoreductase sty1828 SWALL:Q8Z6F0 (EMBL:AL627271) (285 aa) fasta scores: E(): 1.1e-72, 63.7% id in 281 aa, and to Escherichia coli hypothetical protein yeae yeae or b1781 SWALL:YEAE_ECOLI (SWALL:P76234) (284 aa) fasta scores: E(): 4.1e-72, 63.7% id in 281 aa.
 
0.558
ECA0983
Putative membrane protein; Similar to Salmonella typhimurium, and Salmonella typhi putative integral membrane transport protein ygdq or stm3006 or sty3149 SWALL:Q8XES3 (EMBL:AE008838) (237 aa) fasta scores: E(): 2.2e-73, 80.34% id in 234 aa, and to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 hypothetical protein ygdq ygdq or b2832 or c3427 or z4150 or ecs3689 SWALL:YGDQ_ECOLI (SWALL:Q46931) (237 aa) fasta scores: E(): 6.5e-73, 79.48% id in 234 aa.
     
 0.456
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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