STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
amiCSimilar to Escherichia coli O6 N-acetylmuramoyl-L-alanine amidase amic precursor AmiC or b2817 or c3411 SWALL:AMIC_ECOLI (SWALL:Q46929) (417 aa) fasta scores: E(): 2.2e-113, 72.46% id in 414 aa, and to Yersinia pestis N-acetylmuramoyl-L-alanine amidase amic ypo1023 SWALL:Q8ZH85 (EMBL:AJ414146) (416 aa) fasta scores: E(): 1.3e-120, 77.31% id in 410 aa. (414 aa)    
Predicted Functional Partners:
amiB
Similar to Escherichia coli N-acetylmuramoyl-L-alanine amidase AmiB precursor AmiB or b4169 SWALL:AMIB_ECOLI (SWALL:P26365) (445 aa) fasta scores: E(): 5.9e-74, 65.34% id in 430 aa.
 
  
0.930
rlpA
Rare lipoprotein A; Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides.
 
 
 0.623
glpG
Putative membrane protein; Rhomboid-type serine protease that catalyzes intramembrane proteolysis.
  
   0.560
ECA0821
Putative exported protein; Similar to Salmonella typhimurium, and Salmonella typhi putative periplasmic protein YbiS or SWALL:Q8XFD8 (EMBL:AE008734) (306 aa) fasta scores: E(): 1.9e-74, 67.64% id in 306 aa, and to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 protein YbiS precursor SWALL:YBIS_ECOLI (SWALL:P75789) (306 aa) fasta scores: E(): 2.8e-74, 67.64% id in 306 aa.
    
 0.537
nlpD
Putative cell wall degradation lipoprotein; Similar to Escherichia coli, and Shigella flexneri lipoprotein nlpd precursor NlpD or b2742 or sf2765 SWALL:NLPD_ECOLI (SWALL:P33648) (379 aa) fasta scores: E(): 3.1e-54, 57.66% id in 385 aa.
 
   
 0.528
nagZ
Beta-hexosaminidase; Plays a role in peptidoglycan recycling by cleaving the terminal beta-1,4-linked N-acetylglucosamine (GlcNAc) from peptide- linked peptidoglycan fragments, giving rise to free GlcNAc, anhydro-N- acetylmuramic acid and anhydro-N-acetylmuramic acid-linked peptides. Belongs to the glycosyl hydrolase 3 family. NagZ subfamily.
    
 0.527
ECA4161
Similar to Alteromonas sp. beta-hexosaminidase A precursor Cht60 SWALL:HEXA_ALTSO (SWALL:P48823) (598 aa) fasta scores: E(): 1.2e-60, 37.11% id in 590 aa, and to Ralstonia solanacearum putative hydrolase glycosidase protein rsc0769 or rs05085 SWALL:Q8Y1C1 (EMBL:AL646060) (734 aa) fasta scores: E(): 3.2e-82, 45.02% id in 653 aa.
    
 0.527
ECA0170
Putative exported peptidase; Similar to Yersinia pestis putative membrane protein y0078 SWALL:AAM83673 (EMBL:AE013608) (456 aa) fasta scores: E(): 2.5e-78, 71.87% id in 416 aa, and to Salmonella typhi hypothetical protein Sty4090 SWALL:Q8Z2F1 (EMBL:AL627280) (427 aa) fasta scores: E(): 9.5e-72, 67.49% id in 403 aa, and to Escherichia coli hypothetical protein YibP SWALL:YIBP_ECOLI (SWALL:P37690) (419 aa) fasta scores: E(): 3.5e-71, 66.5% id in 403 aa.
 
   
 0.508
ECA3370
Similar to Yersinia pestis putative competence-damaged protein ypo3308 SWALL:Q8ZBT7 (EMBL:AJ414156) (162 aa) fasta scores: E(): 4.4e-38, 65.43% id in 162 aa, and to Salmonella typhi hypothetical protein Sty2951 SWALL:Q8Z4D3 (EMBL:AL627276) (165 aa) fasta scores: E(): 3.6e-37, 63.8% id in 163 aa; Belongs to the CinA family.
 
     0.494
ECA4490
Putative membrane protein; Similar to Rhizobium meliloti hypothetical transmembrane protein smc02371 r01027 or smc02371 SWALL:Q92R83 (EMBL:AL591785) (312 aa) fasta scores: E(): 5.7e-37, 41.27% id in 298 aa, and to Brucella melitensis transporter, dme family bmei1323 SWALL:Q8YG39 (EMBL:AE009570) (319 aa) fasta scores: E(): 1.6e-36, 39.51% id in 291 aa.
   
    0.493
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.