STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA1005Similar to Agrobacterium tumefaciens ABC transporter, nucleotide binding/ATPase protein DfpD or atu6074 or agr_pti_146 SWALL:Q8U661 (EMBL:AE009426) (556 aa) fasta scores: E(): 1.7e-107, 54.13% id in 556 aa, and to Rhizobium meliloti putative peptide transport system ATP-binding ABC transporter protein r03119 or smc03268 SWALL:Q92LE6 (EMBL:AL591793) (625 aa) fasta scores: E(): 1.3e-93, 48.5% id in 567 aa. (575 aa)    
Predicted Functional Partners:
ECA1006
Similar to Agrobacterium tumefaciens ABC transporter, membrane spanning protein atu3435 or agr_l_2782 SWALL:Q8UAD9 (EMBL:AE009274) (341 aa) fasta scores: E(): 2.7e-69, 61.92% id in 302 aa, and to Rhizobium meliloti probable ABC transporter, permease protein ra1137 or sma2083 SWALL:Q92XV3 (EMBL:AE007299) (332 aa) fasta scores: E(): 5.3e-66, 65.92% id in 270 aa.
 0.960
ECA1007
Similar to Rhizobium meliloti probable ABC transporter, permease protein ra1138 or sma2085 SWALL:Q92XV2 (EMBL:AE007299) (328 aa) fasta scores: E(): 1.3e-81, 66.25% id in 323 aa, and to Agrobacterium tumefaciens ABC transporter, membrane spanning protein atu3434 or agr_l_2785 SWALL:Q8UAE0 (EMBL:AE009274) (347 aa) fasta scores: E(): 3.1e-79, 64.92% id in 325 aa.
 
 0.928
ECA1548
Similar to Streptomyces coelicolor putative transport system permease protein sco6645 or sc4g2.19 SWALL:O86691 (EMBL:AL939128) (601 aa) fasta scores: E(): 9.4e-94, 50.35% id in 562 aa, and to Agrobacterium tumefaciens ABC transporter, membrane spanning protein nikb or atu1198 or agr_c_2209 SWALL:Q8UG44 (EMBL:AE009082) (314 aa) fasta scores: E(): 3.6e-20, 31.33% id in 300 aa.
  
 0.911
ECA4421
ABC transporter permease protein; Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 dipeptide transport system permease protein DppC or b3542 or c4357 or z4959 or ecs4422 SWALL:DPPC_ECOLI (SWALL:P37315) (300 aa) fasta scores: E(): 2.7e-36, 40.14% id in 274 aa, and to Ralstonia solanacearum probable dipeptide transmembrane ABC transporter protein DppC2 or rsc1883 or rs03443 SWALL:Q8XY80 (EMBL:AL646067) (311 aa) fasta scores: E(): 4.2e-68, 61.75% id in 285 aa.
 0.810
ECA0135
ABC transporter permease protein; Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 dipeptide transport system permease protein DppC or b3542 or c4357 or z4959 or ecs4422 SWALL:DPPC_ECOLI (SWALL:P37315) (300 aa) fasta scores: E(): 5.1e-44, 45.26% id in 285 aa, and to Ralstonia solanacearum probable transmembrane ABC transporter protein rsc1382 or rs04665 SWALL:Q8XZL3 (EMBL:AL646064) (299 aa) fasta scores: E(): 3.3e-62, 57.71% id in 298 aa.
 0.798
gsiD
Putative ABC transporter permease protein; Part of the ABC transporter complex GsiABCD involved in glutathione import. Probably responsible for the translocation of the substrate across the membrane.
 0.798
ECA1003
Similar to Burkholderia cepacia putative transcription factor SWALL:Q93L29 (EMBL:AF029344) (246 aa) fasta scores: E(): 1.6e-16, 29.14% id in 223 aa, and to Ralstonia solanacearum putative transcription regulator protein rsc0538 or rs04928 SWALL:Q8Y1Z9 (EMBL:AL646059) (340 aa) fasta scores: E(): 6.6e-16, 37.01% id in 208 aa.
       0.773
ECA1004
Probable hydrolase; Similar to Campylobacter jejuni hippurate hydrolase HipO or cj0985C SWALL:HIPO_CAMJE (SWALL:P45493) (383 aa) fasta scores: E(): 1.9e-48, 40.41% id in 386 aa, and to Rhizobium meliloti putative amidohydrolase, similar to hippurate hydrolase protein rb0783 or smb21279 SWALL:Q92VC5 (EMBL:AL603644) (389 aa) fasta scores: E(): 1.9e-65, 49.48% id in 386 aa.
       0.773
ECA0073
ABC transporter permease protein; Similar to Corynebacterium efficiens putative transport protein ce2332 SWALL:BAC19142 (EMBL:AP005222) (305 aa) fasta scores: E(): 2.3e-58, 62.22% id in 270 aa, and to Escherichia coli hypothetical ABC transporter permease protein YliD SWALL:YLID_ECOLI (SWALL:P75799) (303 aa) fasta scores: E(): 1.3e-33, 38.34% id in 266 aa.
 0.757
ECA1008
Similar to Agrobacterium tumefaciens ABC transporter, substrate binding protein atu3433 or agr_l_2786 SWALL:Q8UAE1 (EMBL:AE009273) (585 aa) fasta scores: E(): 1.7e-108, 52.87% id in 522 aa, and to Rhizobium meliloti probable extracellular solute-binding protein, family 5 ra1133 or sma2075 SWALL:Q92XV7 (EMBL:AE007299) (543 aa) fasta scores: E(): 1.6e-100, 49.81% id in 530 aa.
 
  0.748
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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