STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA1023Similar to Neisseria meningitidis transcriptional regulator, MarR family nmb1585 SWALL:Q9JYH5 (EMBL:AE002509) (143 aa) fasta scores: E(): 1.1e-18, 40.71% id in 140 aa, and to Neisseria meningitidis putative transcriptional regulator nma1774 SWALL:Q9JTH6 (EMBL:AL162757) (120 aa) fasta scores: E(): 2.4e-15, 45.53% id in 112 aa. (148 aa)    
Predicted Functional Partners:
ECA1025
Putative RNA pseudouridylate synthase; Similar to Yersinia pestis hypothetical protein ypo1038 or y3143 SWALL:Q8ZH72 (EMBL:AJ414146) (257 aa) fasta scores: E(): 3.4e-82, 75.39% id in 256 aa, and to Escherichia coli O157:H7 hypothetical protein z4107 or ecs3651 SWALL:Q8X6T6 (EMBL:AE005507) (260 aa) fasta scores: E(): 1.4e-75, 71.37% id in 255 aa.
 
     0.619
ECA0942
Putative outer membrane usher protein; Similar to Photorhabdus luminescens MrfC SWALL:Q93MT4 (EMBL:AF396083) (851 aa) fasta scores: E(): 6.4e-137, 43.95% id in 810 aa, and to Proteus mirabilis outer membrane usher protein PmfC precursor pmfC SWALL:PMFC_PROMI (SWALL:P53514) (828 aa) fasta scores: E(): 3e-132, 42.75% id in 807 aa, and to Escherichia coli outer membrane usher protein PapC SWALL:PAPC_ECOLI (SWALL:P07110) (836 aa) fasta scores: E(): 1.6e-126, 43.34% id in 849 aa.
      
 0.536
ECA1024
Similar to Yersinia pestis hypothetical protein Ypo1037 SWALL:Q8ZH73 (EMBL:AJ414146) (110 aa) fasta scores: E(): 9.2e-20, 55.04% id in 109 aa, and to Salmonella typhi hypothetical protein yqcc or sty3104 SWALL:Q8Z438 (EMBL:AL627276) (109 aa) fasta scores: E(): 3.6e-15, 45.79% id in 107 aa.
       0.536
ECA3886
Putative membrane protein; Similar to the C-terminal region of many including Pseudomonas aeruginosa hypothetical protein Pa2870 SWALL:Q9HZX6 (EMBL:AE004713) (525 aa) fasta scores: E(): 1.9e-17, 39.39% id in 165 aa, and to Shewanella oneidensis ggdef domain protein so4457 SWALL:AAN57422 (EMBL:AE015878) (485 aa) fasta scores: E(): 2.1e-17, 39.03% id in 187 aa.
  
 
 0.481
gntR
Similar to Escherichia coli, and Escherichia coli O6 gluconate utilization system Gnt-I transcriptional repressor GntR or b3438 or c4227 SWALL:GNTR_ECOLI (SWALL:P46860) (331 aa) fasta scores: E(): 7.1e-94, 74.62% id in 331 aa.
   
  
 0.471
gntR-2
Partial CDS. Similar to the C-terminal regions of Escherichia coli, and Escherichia coli O6 gluconate utilization system Gnt-I transcriptional repressor GntR or b3438 or c4227 SWALL:GNTR_ECOLI (SWALL:P46860) (331 aa) fasta scores: E(): 4.1e-47, 78.36% id in 171 aa, and to Yersinia pestis gluconate utilization system Gnt-I transcriptional repressor gntr or ypo3955 or y3873 SWALL:Q8ZA63 (EMBL:AJ414160) (331 aa) fasta scores: E(): 1.8e-47, 78.94% id in 171 aa.
   
  
 0.471
hrpW
Type III effector protein; Similar to Erwinia amylovora HrpW protein SWALL:O54508 (EMBL:Y13831) (447 aa) fasta scores: E(): 2.7e-36, 50.67% id in 448 aa, and to Pseudomonas syringae pv. maculicola type III effector hrpwpma SWALL:Q8RP12 (EMBL:AF458044) (424 aa) fasta scores: E(): 4.4e-28, 42.12% id in 470 aa.
   
  
 0.467
ECA0661
Similar to Erwinia chrysanthemi PTS system, beta-glucoside-specific IIabc component ArbF SWALL:PTBA_ERWCH (SWALL:P26207) (631 aa) fasta scores: E(): 2.4e-60, 42.76% id in 622 aa, and to Escherichia coli PTS system, beta-glucoside-specific IIabc component BglF or BglC or BglS or b3722 SWALL:PTBA_ECOLI (SWALL:P08722) (625 aa) fasta scores: E(): 6.6e-60, 42.09% id in 639 aa.
   
 
 0.466
ECA0860
Similar to Bacillus subtilis PTS system, beta-glucoside-specific IIabc component BglP or N17C SWALL:PTBA_BACSU (SWALL:P40739) (609 aa) fasta scores: E(): 1.1e-61, 39.06% id in 640 aa, and to Escherichia coli PTS system, arbutin-, cellobiose-, and salicin-specific IIabc component ascf or b2715 SWALL:PTDA_ECOLI (SWALL:P24241) (485 aa) fasta scores: E(): 6.6e-58, 38.55% id in 472 aa.
   
 
 0.466
nagE
Similar to Escherichia coli PTS system, N-acetylglucosamine-specific IIABC component NagE or pPstN or b0679 SWALL:PTAA_ECOLI (SWALL:P09323) (648 aa) fasta scores: E(): 7.8e-62, 45.16% id in 496 aa.
   
 
 0.466
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.