STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA1056Putative phage-related reverse transcriptase/maturase family protein; Similar to Shigella flexneri putative reverse transcriptase s0042 SWALL:Q9AFX2 (EMBL:AF348706) (405 aa) fasta scores: E(): 0.046, 21.24% id in 353 aa, and to Streptococcus agalactiae prophage lambdasa1, reverse transcriptase/maturase family protein sag0567 SWALL:AAM99468 (EMBL:AE014217) (439 aa) fasta scores: E(): 0.97, 22.78% id in 373 aa. (423 aa)    
Predicted Functional Partners:
ECA1057
Phage-related hypothetical protein; Similar to Staphylococcus aureus orf7 protein SWALL:BAC22947 (EMBL:AB057421) (610 aa) fasta scores: E(): 5.2e-08, 23.82% id in 617 aa, and to Lactococcus lactis AbiK abiK SWALL:Q48614 (EMBL:U35629) (599 aa) fasta scores: E(): 0.001, 23.78% id in 454 aa.
 
    0.949
ECA1055
Hypothetical protein; Similar to the N-terminal region of Escherichia coli O6 hypothetical protein c4514 SWALL:AAN82950 (EMBL:AE016769) (594 aa) fasta scores: E(): 4e-11, 70.83% id in 48 aa.
       0.600
ECA1054
Similar to Escherichia coli putative prophage cp4-6 integrase IntF or b0281 SWALL:INTF_ECOLI (SWALL:P71298) (466 aa) fasta scores: E(): 0.0029, 24.6% id in 443 aa, and to Xylella fastidiosa phage-related integrase xf0631 SWALL:Q9PFM6 (EMBL:AE003908) (413 aa) fasta scores: E(): 1.2, 24.71% id in 445 aa.
  
  
 0.476
ECA3440
Similar to Yersinia pestis hypothetical protein ypo3595 or y0279 SWALL:Q8ZB34 (EMBL:AJ414157) (438 aa) fasta scores: E(): 1.1e-36, 40.92% id in 435 aa, and to Escherichia coli O157:H7 hypothetical protein z0258 or ecs0227 SWALL:Q8X7U8 (EMBL:AE005198) (433 aa) fasta scores: E(): 1.3e-35, 39.2% id in 426 aa.
  
     0.470
ECA1058
Hypothetical protein; No significant database matches.
       0.417
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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