Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ECA1060Putative integrase; Similar to Pasteurella multocida hypothetical protein Pm1948 SWALL:Q9CJP6 (EMBL:AE006231) (506 aa) fasta scores: E(): 7.1e-30, 27.86% id in 506 aa, and to Escherichia coli O157:H7 hypothetical protein z3943 or ecs3511 SWALL:Q8X972 (EMBL:AE005493) (441 aa) fasta scores: E(): 6e-29, 28.63% id in 433 aa. (497 aa)    
Predicted Functional Partners:
ECA1061
Putative integrase; Similar to Escherichia coli O157:H7 hypothetical protein Z3942 SWALL:Q8X403 (EMBL:AE005493) (470 aa) fasta scores: E(): 1.1e-27, 33% id in 506 aa, and to Pasteurella multocida hypothetical protein Pm1947 SWALL:Q9CJP7 (EMBL:AE006231) (678 aa) fasta scores: E(): 2.3e-39, 26.83% id in 641 aa.
     
 0.828
ECA1059
Putative integrase; Similar to Escherichia coli O157:H7 putative site specific recombinase ecs3512 SWALL:Q8X3D8 (EMBL:AP002562) (401 aa) fasta scores: E(): 3.9e-44, 35.44% id in 395 aa, and to Staphylococcus aureus transposase a from transposon tn554 SWALL:TNPA_STAAM (SWALL:P06696) (361 aa) fasta scores: E(): 0.039, 23.1% id in 303 aa.
       0.815
ECA1062
Similar to Escherichia coli O157:H7 hypothetical protein Ecs3509 SWALL:Q8X5G1 (EMBL:AP002562) (132 aa) fasta scores: E(): 1.5e-12, 39.84% id in 128 aa, and to Pasteurella multocida hypothetical protein Pm1946 SWALL:Q9CJP8 (EMBL:AE006231) (136 aa) fasta scores: E(): 1.5e-10, 35.07% id in 134 aa.
       0.814
ECA1063
Similar to Escherichia coli O157:H7 hypothetical protein z3940 or ecs3508 SWALL:Q8X976 (EMBL:AE005493) (156 aa) fasta scores: E(): 0.0053, 26.66% id in 150 aa.
       0.553
tyrA
Similar to Escherichia coli T-protein [includes: chorismate mutase and prephenate dehydrogenase] TyrA or b2600 SWALL:TYRA_ECOLI (SWALL:P07023) (373 aa) fasta scores: E(): 1.6e-123, 87.13% id in 373 aa.
  
    0.414
ECA4133
Similar to Yersinia pestis hypothetical protein ypo0128 ypo0128 or y3906 SWALL:AAM87448 (EMBL:AJ414141) (233 aa) fasta scores: E(): 7.3e-52, 56.22% id in 233 aa, and to Salmonella typhi putative competence protein sty4286 SWALL:Q8Z222 (EMBL:AL627281) (227 aa) fasta scores: E(): 7.7e-46, 53.21% id in 233 aa.
   
    0.414
ECA0824
Similar to Rhodospirillum rubrum pyruvate-flavodoxin oxidoreductase NifJ SWALL:NIFJ_RHORU (SWALL:Q53046) (1191 aa) fasta scores: E(): 0, 54.73% id in 1182 aa, and to Escherichia coli probable pyruvate-flavodoxin oxidoreductase ydbk or b1378 SWALL:NIFJ_ECOLI (SWALL:P52647) (1174 aa) fasta scores: E(): 0, 78.79% id in 1174 aa. Also similar to ECA2957 (47.377% id. in 1182 aa overlap).
    
  0.404
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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