STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ECA1065Hypothetical protein; No significant database matches. (431 aa)    
Predicted Functional Partners:
ECA1066
Hypothetical protein; No significant database matches.
  
    0.815
ECA1054
Similar to Escherichia coli putative prophage cp4-6 integrase IntF or b0281 SWALL:INTF_ECOLI (SWALL:P71298) (466 aa) fasta scores: E(): 0.0029, 24.6% id in 443 aa, and to Xylella fastidiosa phage-related integrase xf0631 SWALL:Q9PFM6 (EMBL:AE003908) (413 aa) fasta scores: E(): 1.2, 24.71% id in 445 aa.
  
     0.760
ECA1609
Mobilization protein; Similar to Enterobacter cloacae MobB protein SWALL:Q9REB6 (EMBL:AJ224861) (653 aa) fasta scores: E(): 1.1e-40, 29.89% id in 582 aa, and to Escherichia coli mobilization protein A MobA or B SWALL:MBA1_ECOLI (SWALL:P08098) (529 aa) fasta scores: E(): 1.8e-18, 28.96% id in 366 aa.
 
   
 0.749
virB10
Putative conjugal transfer protein; Similar to Escherichia coli Virb10 protein VirB10 SWALL:Q91UW7 (EMBL:AJ297913) (383 aa) fasta scores: E(): 1.2e-23, 32.41% id in 401 aa.
 
   
 0.670
virB4
Putative conjugal transfer protein; Similar to Escherichia coli VirB4 protein VirB4 SWALL:Q91UX4 (EMBL:AJ297913) (826 aa) fasta scores: E(): 2.4e-90, 34.71% id in 818 aa.
 
   
 0.644
virB9
Putative conjugal transfer protein; Similar to Escherichia coli VirB9 protein VirB9 SWALL:Q91UW8 (EMBL:AJ297913) (290 aa) fasta scores: E(): 2.5e-15, 32.52% id in 289 aa.
 
   
 0.595
traR
Putative conjugal transfer protein; Similar to Escherichia coli TraR protein TraR SWALL:TRAR_ECOLI (SWALL:P41065) (73 aa) fasta scores: E(): 1e-06, 41.66% id in 72 aa.
  
     0.556
ECA0672
Putative phage-related protein; Similar to Bacteriophage phi CTX orf37 SWALL:Q9ZXI8 (EMBL:AB008550) (895 aa) fasta scores: E(): 3.8e-96, 42.27% id in 906 aa, and to Ralstonia solanacearum hypothetical phage-related protein rsc1898 or rs03464 SWALL:Q8XY65 (EMBL:AL646067) (902 aa) fasta scores: E(): 4.5e-170, 49.1% id in 894 aa.
 
 
 0.552
dnaN
DNA polymerase III, beta chain; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of r [...]
  
 0.532
ECA1059
Putative integrase; Similar to Escherichia coli O157:H7 putative site specific recombinase ecs3512 SWALL:Q8X3D8 (EMBL:AP002562) (401 aa) fasta scores: E(): 3.9e-44, 35.44% id in 395 aa, and to Staphylococcus aureus transposase a from transposon tn554 SWALL:TNPA_STAAM (SWALL:P06696) (361 aa) fasta scores: E(): 0.039, 23.1% id in 303 aa.
  
   
 0.531
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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