STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA1067Similar to Chromobacterium violaceum hypothetical protein cv0650 SWALL:Q7P0B7 (EMBL:AE016912) (423 aa) fasta scores: E(): 1.3e-22, 38.4% id in 440 aa. (447 aa)    
Predicted Functional Partners:
rdgB
Regulator of pectin lyase production; Similar to Erwinia carotovora DNA-binding protein RdgB SWALL:RDGB_ERWCA (SWALL:Q47588) (117 aa) fasta scores: E(): 2.2e-41, 94.01% id in 117 aa, and to Bacteriophage Mu middle operon regulator Mor or 17 or e17 SWALL:VMOR_BPMU (SWALL:P23848) (129 aa) fasta scores: E(): 4.3e-06, 34.28% id in 105 aa.
  
     0.551
ECA3722
Putative phage-related protein; Similar to Bacteriophage Mu g protein g or 31 SWALL:VPG_BPMU (SWALL:Q01261) (156 aa) fasta scores: E(): 0.003, 31.09% id in 164 aa and to Salmonella typhi putative bacteriophage protein sty1618 SWALL:Q8Z6U8 (EMBL:AL627270) (152 aa) fasta scores: E(): 1.2e-35, 71.23% id in 146 aa.
  
     0.550
ECA3695
Phage regulatory protein protein; Similar to Bacteriophage Mu positive regulator of late transcription C SWALL:VPC_BPMU (SWALL:P06022) (140 aa) fasta scores: E(): 0.00077, 32.14% id in 112 aa and to Erwinia carotovora DNA-binding protein RdgB SWALL:RDGB_ERWCA (SWALL:Q47588) (117 aa) fasta scores: E(): 1.8e-22, 60.19% id in 103 aa, and to Salmonella typhi putative bacteriophage transcriptional regulator sty1591 SWALL:Q8Z6X3 (EMBL:AL627270) (129 aa) fasta scores: E(): 5.5e-35, 67.44% id in 129 aa. Also similar to ECA2437 (59.259% id. in 108 aa overlap).
  
     0.544
ECA3726
Putative phage-related protein; Similar to Bacteriophage Mu protein Gp36 SWALL:VG36_BPMU (SWALL:Q9T1V9) (141 aa) fasta scores: E(): 0.0025, 26.02% id in 146 aa and to Salmonella typhi phage-related protein Sty1622 SWALL:Q8Z6U4 (EMBL:AL627270) (148 aa) fasta scores: E(): 4.4e-43, 75.67% id in 148 aa.
  
     0.483
ECA1065
Hypothetical protein; No significant database matches.
  
    0.449
ECA1066
Hypothetical protein; No significant database matches.
       0.449
ECA3733
Putative phage-related protein; Similar to Pectobacterium carotovorum subsp. carotovorum carotovorum orf1, orf2, orf4-12 genes, bacteriocin SWALL:Q9KW58 (EMBL:AB045036) (309 aa) fasta scores: E(): 1.8e-50, 53.79% id in 303 aa, and to Salmonella typhi hypothetical protein Sty1630 SWALL:Q8Z6T6 (EMBL:AL627270) (294 aa) fasta scores: E(): 1.1e-68, 65.41% id in 292 aa.
  
     0.430
ECA3740
Similar to the N-terminus of Bacteriophage P2 tail protein I SWALL:VPI_BPP2 (SWALL:P26701) (176 aa) fasta scores: E(): 5.5, 29.29% id in 99 aa. Also hhighly similar to Erwinia carotovora tail fiber SWALL:Q9WXA4 (EMBL:AB017338) (182 aa) fasta scores: E(): 3.8e-31, 59.15% id in 142 aa.
  
     0.424
ECA3703
Conserved hypothetical phage-related protein; Similar to Salmonella typhi Eha SWALL:O87649 (EMBL:AF091717) (322 aa) fasta scores: E(): 1.5e-63, 86.9% id in 229 aa, and to Vibrio cholerae Eha protein vc1798 SWALL:Q9KR48 (EMBL:AE004256) (383 aa) fasta scores: E(): 6.4e-25, 40.15% id in 386 aa.
  
     0.421
ECA3835
Putative membrane protein; Similar to Pseudomonas putida conserved hypothetical protein pp2384 SWALL:AAN67997 (EMBL:AE016783) (104 aa) fasta scores: E(): 8.6e-14, 40.77% id in 103 aa, and to Pseudomonas aeruginosa hypothetical protein Pa2038 SWALL:Q9I277 (EMBL:AE004630) (104 aa) fasta scores: E(): 1.9e-13, 42.85% id in 98 aa.
  
     0.407
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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