STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA1071Conserved hypothetical protein; Similar to Escherichia coli O157:H7 orf, hypothetical protein z4045 or ecs3591 SWALL:Q8X7Z8 (EMBL:AE005501) (78 aa) fasta scores: E(): 7.7e-25, 81.33% id in 75 aa, and to Salmonella typhimurium, and Salmonella typhi putative cytoplasmic protein stm2923 or sty3048 SWALL:Q8XEM2 (EMBL:AE008833) (78 aa) fasta scores: E(): 2.1e-24, 78.66% id in 75 aa. (75 aa)    
Predicted Functional Partners:
ECA1070
Putative 3-polyprenyl-4-hydroxybenzoate carboxy-lyase; Involved in the non-oxidative decarboxylation and detoxification of phenolic derivatives.
 
  
 0.992
ubiX
3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for 4-hydroxy-3-polyprenylbenzoic acid decarboxylase UbiD. The prenyltransferase is metal-independent and links a dimethylallyl moiety from dimethylallyl monophosphate (DMAP) to the flavin N5 and C6 atoms of FMN; Belongs to the UbiX/PAD1 family.
 
  
 0.926
pmeB
Similar to Erwinia chrysanthemi pectinesterase B precursor PemB SWALL:PMEB_ERWCH (SWALL:Q47474) (433 aa) fasta scores: E(): 8.6e-100, 65.48% id in 394 aa, and to Erwinia carotovora pectinesterase b pemB SWALL:PMEB_ERWCA (SWALL:P55743) (178 aa) fasta scores: E(): 7.6e-61, 91.47% id in 176 aa.
  
     0.697
alaE
Putative membrane protein; Exports L-alanine; Belongs to the AlaE exporter family.
  
     0.670
ECA2490
Putative maltoporin; Weakly similar to Klebsiella pneumoniae maltoporin precursor LamB SWALL:LAMB_KLEPN (SWALL:P31242) (429 aa) fasta scores: E(): 7.1e-14, 25.87% id in 398 aa, and to Escherichia coli maltoporin precursor LamB or MalB or b4036 SWALL:LAMB_ECOLI (SWALL:P02943) (446 aa) fasta scores: E(): 3.4e-05, 24.11% id in 394 aa.
  
     0.661
ECA1474
Conserved hypothetical protein; Similar to Escherichia coli, and Escherichia coli O157:H7 hypothetical protein year or b1797 or z2839 or ecs2506 SWALL:YEAR_ECOLI (SWALL:P76248) (119 aa) fasta scores: E(): 3.1e-30, 66.66% id in 105 aa, and to Salmonella typhi hypothetical protein Sty1850 SWALL:Q8Z6D6 (EMBL:AL627271) (120 aa) fasta scores: E(): 5.8e-30, 65.71% id in 105 aa.
  
     0.637
ECA2630
Phage-related protein; Similar to Salmonella typhimurium phage ST64B Sb30 SWALL:AAL25908 (EMBL:AY055382) (189 aa) fasta scores: E(): 1e-30, 50% id in 186 aa, and in parts to many other Bacteriophage exodeoxyribonuclease. e.g. Bacteriophage T4 DexA SWALL:EXOD_BPT4 (SWALL:P04536) (227 aa) fasta scores: E(): 0.00055, 26.19% id in 210 aa and to the C-terminal region of Escherichia coli O157:H7 putative exonuclease VIII, ds DNA exonuclease, 5'--> 3' specific encoded by prophage CP-933o exoo or z2037 or ecs1759 SWALL:Q8X287 (EMBL:AE005343) (823 aa) fasta scores: E(): 1.2e-27, 44.44% id in 189 aa.
  
     0.619
ECA1609
Mobilization protein; Similar to Enterobacter cloacae MobB protein SWALL:Q9REB6 (EMBL:AJ224861) (653 aa) fasta scores: E(): 1.1e-40, 29.89% id in 582 aa, and to Escherichia coli mobilization protein A MobA or B SWALL:MBA1_ECOLI (SWALL:P08098) (529 aa) fasta scores: E(): 1.8e-18, 28.96% id in 366 aa.
  
     0.592
ECA0658
Putative exported protein; Similar to Salmonella typhimurium periplasmic protein related to spheroblast formation Spy or stm1308 SWALL:Q8ZPU7 (EMBL:AE008757) (161 aa) fasta scores: E(): 1.4e-27, 58.78% id in 165 aa, and to Salmonella typhi putative exported protein sty1805 SWALL:Q8Z6G4 (EMBL:AL627271) (161 aa) fasta scores: E(): 2.6e-27, 58.18% id in 165 aa, and to Escherichia coli spheroplast protein Y precursor Spy SWALL:SPY_ECOLI (SWALL:P77754) (161 aa) fasta scores: E(): 1.6e-25, 55.15% id in 165 aa.
  
     0.579
pptA
Similar to Escherichia coli hypothetical protein ydce or b1461 SWALL:YDCE_ECOLI (SWALL:P31992) (77 aa) fasta scores: E(): 6e-11, 46.66% id in 75 aa, and to Xylella fastidiosa hypothetical protein Xf1725 SWALL:Q9PCQ3 (EMBL:AE003996) (82 aa) fasta scores: E(): 0.0047, 35.13% id in 74 aa; Belongs to the 4-oxalocrotonate tautomerase family. PptA subfamily.
  
     0.577
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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