STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fecCiron(III) dicitrate transport system permease protein; Similar to Escherichia coli iron FecC or b4289 SWALL:FECC_ECOLI (SWALL:P15030) (332 aa) fasta scores: E(): 2.5e-94, 74.09% id in 332 aa, and to Shigella flexneri 2a FecC SWALL:Q93F20 (EMBL:AF326777) (325 aa) fasta scores: E(): 2.3e-93, 75.46% id in 322 aa; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily. (331 aa)    
Predicted Functional Partners:
fecE
iron(III) dicitrate transport ATP-binding protein; Similar to Escherichia coli iron FecE or b4287 SWALL:FECE_ECOLI (SWALL:P15031) (255 aa) fasta scores: E(): 8.2e-64, 67.84% id in 255 aa, and to Shigella flexneri 2a ATP-binding protein FecE SWALL:AAL08451 (EMBL:AF326777) (255 aa) fasta scores: E(): 8.2e-64, 67.84% id in 255 aa.
 
  
  0.980
fecB
iron(III) dicitrate-binding periplasmic protein; Similar to Escherichia coli iron FecB or b4290 SWALL:FECB_ECOLI (SWALL:P15028) (300 aa) fasta scores: E(): 1.1e-80, 70.66% id in 300 aa, and to Shigella flexneri 2a FecB SWALL:Q93F19 (EMBL:AF326777) (300 aa) fasta scores: E(): 4.8e-80, 70% id in 300 aa.
 
 
 0.964
fecD
iron(III) dicitrate transport system permease protein; Similar to Escherichia coli iron FecD or b4288 SWALL:FECD_ECOLI (SWALL:P15029) (318 aa) fasta scores: E(): 1.6e-85, 69.3% id in 316 aa, and to Shigella flexneri 2a FecD SWALL:Q93F21 (EMBL:AF326777) (318 aa) fasta scores: E(): 2.1e-85, 69.3% id in 316 aa; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
  
 
0.931
cbrD
Similar to Erwinia chrysanthemi achromobactin transport ATP-binding protein CbrD SWALL:CBRD_ERWCH (SWALL:Q47087) (273 aa) fasta scores: E(): 3.9e-64, 70.75% id in 253 aa.
 
 0.894
hmuV
Hemin transport system ATP-binding protein; Part of the ABC transporter complex HmuTUV involved in hemin import. Responsible for energy coupling to the transport system.
 
 
 0.891
fhuC
Similar to Escherichia coli ferrichrome transport ATP-binding protein FhuC or b0151 SWALL:FHUC_ECOLI (SWALL:P07821) (265 aa) fasta scores: E(): 7.5e-80, 79.92% id in 264 aa.
 
 0.891
ECA4254
Putative iron(III) ABC transporter ATP-binding protein; Similar to Escherichia coli ferrichrome transport ATP-binding protein FhuC or b0151 SWALL:FHUC_ECOLI (SWALL:P07821) (265 aa) fasta scores: E(): 1.2e-25, 37.5% id in 256 aa, and to Brucella melitensis iron(III) dicitrate transport ATP-binding protein bmeii0537 SWALL:Q8YCJ1 (EMBL:AE009689) (264 aa) fasta scores: E(): 6e-28, 42.21% id in 244 aa.
 
 0.878
hmuT
Similar to Yersinia pestis hemin-binding periplasmic protein HmuT precursor HmuT or ypo0281 or y0541 SWALL:HMUT_YERPE (SWALL:Q56991) (279 aa) fasta scores: E(): 2.7e-57, 60.66% id in 272 aa.
 
 0.784
btuF
Vitamin B12 transport protein; Part of the ABC transporter complex BtuCDF involved in vitamin B12 import. Binds vitamin B12 and delivers it to the periplasmic surface of BtuC.
 
 0.784
ECA3094
Similar to Haemophilus influenzae hypothetical ABC transporter ATP-binding protein Hi1470 SWALL:YE70_HAEIN (SWALL:Q57399) (253 aa) fasta scores: E(): 9.5e-36, 46.12% id in 245 aa, and to Pasteurella multocida hypothetical protein Pm1147 SWALL:Q9CLR4 (EMBL:AE006155) (246 aa) fasta scores: E(): 1.2e-38, 47.22% id in 252 aa.
 
 0.781
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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