STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
fecBiron(III) dicitrate-binding periplasmic protein; Similar to Escherichia coli iron FecB or b4290 SWALL:FECB_ECOLI (SWALL:P15028) (300 aa) fasta scores: E(): 1.1e-80, 70.66% id in 300 aa, and to Shigella flexneri 2a FecB SWALL:Q93F19 (EMBL:AF326777) (300 aa) fasta scores: E(): 4.8e-80, 70% id in 300 aa. (304 aa)    
Predicted Functional Partners:
fecD
iron(III) dicitrate transport system permease protein; Similar to Escherichia coli iron FecD or b4288 SWALL:FECD_ECOLI (SWALL:P15029) (318 aa) fasta scores: E(): 1.6e-85, 69.3% id in 316 aa, and to Shigella flexneri 2a FecD SWALL:Q93F21 (EMBL:AF326777) (318 aa) fasta scores: E(): 2.1e-85, 69.3% id in 316 aa; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 
 0.996
fecE
iron(III) dicitrate transport ATP-binding protein; Similar to Escherichia coli iron FecE or b4287 SWALL:FECE_ECOLI (SWALL:P15031) (255 aa) fasta scores: E(): 8.2e-64, 67.84% id in 255 aa, and to Shigella flexneri 2a ATP-binding protein FecE SWALL:AAL08451 (EMBL:AF326777) (255 aa) fasta scores: E(): 8.2e-64, 67.84% id in 255 aa.
 
  
  0.977
fecC
iron(III) dicitrate transport system permease protein; Similar to Escherichia coli iron FecC or b4289 SWALL:FECC_ECOLI (SWALL:P15030) (332 aa) fasta scores: E(): 2.5e-94, 74.09% id in 332 aa, and to Shigella flexneri 2a FecC SWALL:Q93F20 (EMBL:AF326777) (325 aa) fasta scores: E(): 2.3e-93, 75.46% id in 322 aa; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 
 0.964
fecA
iron(III) dicitrate transport protein; Similar to Escherichia coli iron FecA or b4291 SWALL:FECA_ECOLI (SWALL:P13036) (774 aa) fasta scores: E(): 0, 80.56% id in 782 aa, and to Pseudomonas aeruginosa FecA or pa3901 SWALL:Q9HXB2 (EMBL:AE004807) (784 aa) fasta scores: E(): 1.6e-196, 62.43% id in 788 aa.
 
  
 0.964
cbrD
Similar to Erwinia chrysanthemi achromobactin transport ATP-binding protein CbrD SWALL:CBRD_ERWCH (SWALL:Q47087) (273 aa) fasta scores: E(): 3.9e-64, 70.75% id in 253 aa.
 
 
 0.850
ECA2563
Similar to Yersinia pestis putative iron transport permease ypo4023 or y4044 SWALL:Q8ZA03 (EMBL:AJ414160) (319 aa) fasta scores: E(): 2.3e-88, 73.18% id in 317 aa, and to Agrobacterium tumefaciens ABC transporter, membrane spanning protein atu2474 or agr_c_4489 SWALL:Q8UCK9 (EMBL:AE009194) (321 aa) fasta scores: E(): 5.5e-66, 55.76% id in 321 aa; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
  
    0.791
fhuC
Similar to Escherichia coli ferrichrome transport ATP-binding protein FhuC or b0151 SWALL:FHUC_ECOLI (SWALL:P07821) (265 aa) fasta scores: E(): 7.5e-80, 79.92% id in 264 aa.
 
 
 0.754
ECA2561
Similar to Yersinia pestis putative iron ABC transporter, ATP-binding protein ypo4025 or FecE or y4046 SWALL:AAM87590 (EMBL:AJ414160) (252 aa) fasta scores: E(): 2.1e-63, 72.61% id in 252 aa, and to Brucella melitensis iron bmeii0604 SWALL:Q8YCC8 (EMBL:AE009696) (252 aa) fasta scores: E(): 1.6e-54, 61.75% id in 251 aa.
  
  
 0.752
ECA2562
Similar to Yersinia pestis putative iron transport permease ypo4024 SWALL:Q8ZA02 (EMBL:AJ414160) (335 aa) fasta scores: E(): 3.2e-76, 66.13% id in 313 aa, and to Agrobacterium tumefaciens ABC transporter, membrane spanning protein atu2475 or agr_c_4491 SWALL:Q8UCK8 (EMBL:AE009194) (322 aa) fasta scores: E(): 8.2e-58, 51.63% id in 306 aa; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
  
  
 0.725
fhuD
Similar to Escherichia coli ferrichrome-binding periplasmic protein precursor FhuD or b0152 SWALL:FHUD_ECOLI (SWALL:P07822) (296 aa) fasta scores: E(): 4.7e-62, 57.38% id in 291 aa.
 
 
 0.705
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
Server load: medium (62%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.