STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA1086Putative signaling protein; Similar to the C-terminal regions of several including Pseudomonas aeruginosa hypothetical protein Pa1107 pa1107 SWALL:Q9I4M8 (EMBL:AE004541) (398 aa) fasta scores: E(): 2.1e-17, 39.68% id in 189 aa, and to Xanthomonas axonopodis ggdef family protein xac1939 SWALL:Q8PL67 (EMBL:AE011829) (948 aa) fasta scores: E(): 5.2e-16, 37.43% id in 203 aa. (235 aa)    
Predicted Functional Partners:
ECA0046
Putative signaling membrane protein; Similar to Escherichia coli Rtn protein or b2176 SWALL:RTN_ECOLI (SWALL:P76446) (518 aa) fasta scores: E(): 6.1e-42, 30.6% id in 513 aa, and to Salmonella typhi putative Rtn protein sty0376 SWALL:Q8Z923 (EMBL:AL627266) (524 aa) fasta scores: E(): 1.8e-67, 35.68% id in 524 aa. In E.coli it's found to be involved in resistance to phages N4 and lambda.
   
 0.924
ECA1081
Probable transcriptional regulator; Similar to Escherichia coli O6 hypothetical protein ylab or c0575 SWALL:AAN79053 (EMBL:AE016756) (518 aa) fasta scores: E(): 1.1e-54, 35.17% id in 506 aa, and to Shigella flexneri orf, conserved hypothetical protein sf0402 SWALL:AAN42058 (EMBL:AE015072) (518 aa) fasta scores: E(): 3.2e-53, 34.58% id in 506 aa.
   
 0.918
ECA2091
Putative signaling membrane protein; Similar to Pseudomonas aeruginosa hypothetical protein Pa2200 SWALL:Q9I1R7 (EMBL:AE004646) (531 aa) fasta scores: E(): 4e-52, 32.23% id in 518 aa, and to Salmonella typhimurium putative diguanylate cyclase/phosphodiesterase domain 2 ylab or stm0468 SWALL:Q8ZRB0 (EMBL:AE008717) (516 aa) fasta scores: E(): 2.3e-34, 29.72% id in 508 aa.
   
 0.914
ECA2008
Putative signaling protein; Similar to Pseudomonas aeruginosa hypothetical protein Pa2567 SWALL:Q9I0R8 (EMBL:AE004685) (587 aa) fasta scores: E(): 1.7e-61, 32.99% id in 582 aa, and to Xanthomonas campestris hypothetical protein Xcc1777 SWALL:Q8P9S1 (EMBL:AE012279) (618 aa) fasta scores: E(): 2e-57, 32.88% id in 590 aa.
 0.893
arcB
Similar to Escherichia coli, and Shigella flexneri aerobic respiration control sensor protein ArcB or b3210 or sf3250 SWALL:ARCB_ECOLI (SWALL:P22763) (778 aa) fasta scores: E(): 8.6e-180, 75.88% id in 788 aa, and to Yersinia pestis aerobic respiration control sensor/response regulatory protein ArcB SWALL:Q8ZB69 (EMBL:AJ414157) (778 aa) fasta scores: E(): 3.6e-190, 80.71% id in 788 aa.
 0.873
ECA3549
Putative signaling protein; Similar to Vibrio vulnificus response regulator VieA vv21511 SWALL:AAO08375 (EMBL:AE016813) (386 aa) fasta scores: E(): 5.5e-16, 30.04% id in 233 aa, and to Anabaena sp. two-component response regulator alr1230 SWALL:Q8YXI3 (EMBL:AP003585) (403 aa) fasta scores: E(): 7.6e-16, 30.35% id in 224 aa.
 
 0.868
ECA1087
Putative lipoprotein; Similar to Leptospira interrogans hypothetical protein la1420 SWALL:AAN48619 (EMBL:AE011322) (124 aa) fasta scores: E(): 0.0042, 31.06% id in 132 aa, and to Pseudomonas aeruginosa hypothetical protein Pa0170 SWALL:Q9I6W2 (EMBL:AE004455) (126 aa) fasta scores: E(): 0.048, 30.88% id in 136 aa.
  
   0.822
rpfA
Two-component sensor kinase and response regulator; Similar to Pectobacterium carotovorum subsp. carotovorum sensor/regulator protein RpfA SWALL:O08235 (EMBL:U62023) (929 aa) fasta scores: E(): 0, 92.88% id in 928 aa, and to Pectobacterium carotovorum subsp. carotovorum sensory kinase ExpS SWALL:O32556 (EMBL:Y13670) (928 aa) fasta scores: E(): 0, 95.36% id in 928 aa.
 
 0.794
ECA1088
Similar to Leptospira interrogans conserved hypothetical protein la1421 SWALL:AAN48620 (EMBL:AE011322) (184 aa) fasta scores: E(): 9.5e-09, 26.94% id in 167 aa, and to Pseudomonas aeruginosa hypothetical protein Pa0171 SWALL:Q9I6W1 (EMBL:AE004455) (180 aa) fasta scores: E(): 2.9e-06, 27.38% id in 168 aa.
  
    0.777
ECA3271
Similar to Yersinia pestis hypothetical protein Ypo3988 SWALL:Q8ZA32 (EMBL:AJ414160) (276 aa) fasta scores: E(): 1.6e-49, 51.48% id in 235 aa, and to Escherichia coli O157:H7 orf, hypothetical protein yhjh or z4939 or ecs4405 SWALL:Q8X5M5 (EMBL:AE005578) (255 aa) fasta scores: E(): 5.4e-46, 50.63% id in 237 aa.
 
 
  0.772
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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