STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA1092Similar to Escherichia coli uxu operon transcriptional regulator UxuR or b4324 SWALL:UXUR_ECOLI (SWALL:P39161) (257 aa) fasta scores: E(): 2.8e-47, 54.91% id in 244 aa, and to Yersinia pestis putative transcriptional regulatory protein ypo1279 or UxuR or y2904 SWALL:Q8ZGL0 (EMBL:AJ414147) (266 aa) fasta scores: E(): 1e-67, 71.95% id in 246 aa. (244 aa)    
Predicted Functional Partners:
uxuA
Mannonate dehydratase; Catalyzes the dehydration of D-mannonate; Belongs to the mannonate dehydratase family.
 
   
 0.573
nadR
Similar to Salmonella typhimurium transcriptional regulator NadR SWALL:NADR_SALTY (SWALL:P24518) (410 aa) fasta scores: E(): 1.1e-140, 85.5% id in 407 aa, and to Escherichia coli transcriptional regulator NadR or NadI or b4390 SWALL:NADR_ECOLI (SWALL:P27278) (410 aa) fasta scores: E(): 2.2e-139, 83.9% id in 410 aa.
   
    0.548
exuT
Galacturonate transporter; Similar to Erwinia chrysanthemi ExuT SWALL:P94774 (EMBL:U86689) (345 aa) fasta scores: E(): 6.4e-122, 88.78% id in 330 aa, and to Ralstonia solanacearum ExuT SWALL:Q93AS8 (EMBL:AF417111) (439 aa) fasta scores: E(): 2.8e-99, 56.39% id in 422 aa.
 
   
 0.499
ECA1090
Putative lipoprotein; Weakly similar to Thermotoga maritima lipase, putative tm1350 SWALL:Q9X171 (EMBL:AE001789) (259 aa) fasta scores: E(): 3e-06, 28.31% id in 226 aa, and to Yersinia pestis putative membrane protein ypo4014 or y4035 SWALL:Q8ZA12 (EMBL:AJ414160) (487 aa) fasta scores: E(): 6.9e-07, 24.4% id in 295 aa.
       0.485
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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