STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pehAEndo-polygalacturonase; Similar to Erwinia carotovora endo-polygalacturonase precursor PehA SWALL:PGL2_ERWCA (SWALL:P26509) (402 aa) fasta scores: E(): 1.4e-143, 97.76% id in 402 aa, and to Erwinia carotovora Peh precursor SWALL:Q9S5V7 (EMBL:AB022681) (402 aa) fasta scores: E(): 1.3e-140, 95.77% id in 402 aa; Belongs to the glycosyl hydrolase 28 family. (402 aa)    
Predicted Functional Partners:
pemA
Similar to Erwinia chrysanthemi pectinesterase a precursor PemA or Pem SWALL:PMEA_ERWCH (SWALL:P07863) (366 aa) fasta scores: E(): 3.5e-98, 70.47% id in 359 aa.
  
 0.986
pmeB
Similar to Erwinia chrysanthemi pectinesterase B precursor PemB SWALL:PMEB_ERWCH (SWALL:Q47474) (433 aa) fasta scores: E(): 8.6e-100, 65.48% id in 394 aa, and to Erwinia carotovora pectinesterase b pemB SWALL:PMEB_ERWCA (SWALL:P55743) (178 aa) fasta scores: E(): 7.6e-61, 91.47% id in 176 aa.
 
  
 0.962
pelX
Similar to Erwinia chrysanthemi exopolygalacturonate lyase PelX SWALL:Q9Z5P8 (EMBL:Y16797) (734 aa) fasta scores: E(): 1.9e-206, 73.8% id in 733 aa, and to Erwinia chrysanthemi pectate disaccharide-lyase precursor PelX SWALL:PELX_ERWCH (SWALL:P22751) (749 aa) fasta scores: E(): 2.8e-195, 74.16% id in 689 aa.
  
  
 0.941
ogl
Oligogalacturonate lyase; Involved in degradation of pectin, which causes soft-rod disease in plants.
     
 0.933
pelW
Similar to Erwinia chrysanthemi pectate disaccharide-lyase PelW or KdgC SWALL:PELW_ERWCH (SWALL:Q05526) (553 aa) fasta scores: E(): 1.8e-175, 73.97% id in 538 aa. Also similar to ECA2135 (PelB) (37.782% id 532 aa overlap).
     
 0.932
uxaC
Uronate isomerase; Similar to Escherichia coli, Escherichia coli O6, and Shigella flexneri uronate isomerase UxaC or b3092 or c3850 or sf3132 SWALL:UXAC_ECOLI (SWALL:P42607) (470 aa) fasta scores: E(): 8.6e-183, 89.33% id in 469 aa.
 
  
 0.919
ECA3112
Pectate lyase; Similar to Bacillus sp pectate lyase PelK SWALL:BAA05383 (EMBL:D26349) (420 aa) fasta scores: E(): 2.7e-35, 35.16% id in 472 aa, and to Erwinia chrysanthemi pectate lyase a precursor PelA SWALL:PELA_ERWCH (SWALL:P29155) (393 aa) fasta scores: E(): 1.1e-27, 31.9% id in 442 aa.
 
  
 0.909
ECA2135
Similar to Erwinia carotovora periplasmic pectate lyase precursor PelB SWALL:PELP_ERWCA (SWALL:P14005) (568 aa) fasta scores: E(): 0, 97% id in 568 aa, and to Erwinia carotovora pectatelyase SWALL:Q47466 (EMBL:J03673) (568 aa) fasta scores: E(): 0, 96.3% id in 568 aa. Also similar to ECA2402 (PelB) (37.782% id 532 aa overlap).
     
  0.878
pnl
Pectin lyase; Previously sequenced as Erwinia carotovora pectin lyase Pnl SWALL:PLYD_ERWCA (SWALL:P24112) (314 aa) fasta scores: E(): 5.8e-119, 94.58% id in 314 aa.
 
  
 0.810
ECA3552
Similar to Prevotella ruminicola polygalacturonase SWALL:Q9WXE7 (EMBL:AB022865) (494 aa) fasta scores: E(): 3.9e-17, 23.87% id in 423 aa, and to Agrobacterium tumefaciens polygalacturonase atu4560 or agr_l_619 SWALL:Q8U794 (EMBL:AE009384) (453 aa) fasta scores: E(): 2.8e-56, 36.03% id in 444 aa; Belongs to the glycosyl hydrolase 28 family.
  
  
  0.788
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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