STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
phoRSimilar to Escherichia coli phosphate regulon sensor protein PhoR or NmpB or b0400 SWALL:PHOR_ECOLI (SWALL:P08400) (431 aa) fasta scores: E(): 1e-129, 74.65% id in 430 aa, and to Yersinia pestis phosphate regulon sensor protein PhoR or ypo3204 or y0979 SWALL:AAM84560 (EMBL:AJ414155) (438 aa) fasta scores: E(): 9.4e-148, 83.06% id in 437 aa. (440 aa)    
Predicted Functional Partners:
phoB
Phosphate regulon response regulator; Similar to Escherichia coli, and Escherichia coli O157:H7 phosphate regulon transcriptional regulatory protein PhoB or b0399 or z0497 or ecs0449 SWALL:PHOB_ECOLI (SWALL:P08402) (229 aa) fasta scores: E(): 1.5e-81, 89.08% id in 229 aa, and to Yersinia pestis phosphate regulon transcriptional regulatory protein PhoB or ypo3205 SWALL:Q8ZC21 (EMBL:AJ414155) (229 aa) fasta scores: E(): 1.6e-84, 93.88% id in 229 aa.
 0.998
ECA1112
Similar to Yersinia pestis phosphate binding protein PstS or ypo3203 or y0980 SWALL:Q8ZC23 (EMBL:AJ414155) (354 aa) fasta scores: E(): 1.9e-76, 68.88% id in 286 aa, and to Pseudomonas aeruginosa phosphate binding protein psts or pa5369 SWALL:Q9Z9M3 (EMBL:AB017492) (323 aa) fasta scores: E(): 1.3e-62, 54.91% id in 295 aa.
 
  
 0.859
pehR
Two-component response regulator of virulence determinants; Similar to Pectobacterium carotovorum subsp. carotovorum response regulator PehR SWALL:Q9ZIN9 (EMBL:AF022772) (227 aa) fasta scores: E(): 1.5e-76, 91.26% id in 229 aa, and to Erwinia chrysanthemi PhoP protein phoP SWALL:CAD33237 (EMBL:AJ489252) (222 aa) fasta scores: E(): 7.2e-74, 87.83% id in 222 aa.
 
 0.844
ompR
Two-component osmolarity response regulator; Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, Salmonella typhimurium, Salmonella typhi, and Shigella flexneri transcriptional regulatory protein OmpR or OmpB or Kmt or b3405 or c4181 or z4760 or ecs4247 or stm3502 or sty4294 or t4004 or sf3424 SWALL:OMPR_ECOLI (SWALL:P03025) (239 aa) fasta scores: E(): 3.6e-91, 99.16% id in 239 aa.
 
 0.831
phoU
Phosphate transport system protein; Part of the phosphate (Pho) regulon, which plays a key role in phosphate homeostasis. PhoU is essential for the repression of the Pho regulon at high phosphate conditions.
 
   
 0.774
arcB
Similar to Escherichia coli, and Shigella flexneri aerobic respiration control sensor protein ArcB or b3210 or sf3250 SWALL:ARCB_ECOLI (SWALL:P22763) (778 aa) fasta scores: E(): 8.6e-180, 75.88% id in 788 aa, and to Yersinia pestis aerobic respiration control sensor/response regulatory protein ArcB SWALL:Q8ZB69 (EMBL:AJ414157) (778 aa) fasta scores: E(): 3.6e-190, 80.71% id in 788 aa.
 
 
0.723
arcA
Aerobic respiration control protein; Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri aerobic respiration control protein ArcA or Dye or FexA or SfrA or Seg or Msp or CpxC or b4401 or c5488 or z6004 or ecs5359 or sf4433 SWALL:ARCA_ECOLI (SWALL:P03026) (238 aa) fasta scores: E(): 6.2e-85, 94.11% id in 238 aa.
 
 0.703
cpxR
Two-component response regulator; Similar to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri transcriptional regulatory protein CpxR or b3912 or z5457 or ecs4838 or sf3991 SWALL:CPXR_ECOLI (SWALL:P16244) (232 aa) fasta scores: E(): 5.3e-78, 88.79% id in 232 aa.
 
 0.692
baeR
Two-component system response regulator; Similar to Escherichia coli, and Escherichia coli O6 transcriptional regulatory protein BaeR baer or b2079 or c2605 SWALL:BAER_ECOLI (SWALL:P30846) (240 aa) fasta scores: E(): 5.7e-63, 73.12% id in 227 aa.
 
 0.678
ECA0785
Two component system response regulator; Similar to Alcaligenes eutrophus transcriptional activator protein CzcR czcR SWALL:CZCR_ALCEU (SWALL:Q44006) (225 aa) fasta scores: E(): 8.9e-30, 42.15% id in 223 aa, and to Brucella suis DNA-binding response regulator br0612 SWALL:AAN29541 (EMBL:AE014368) (235 aa) fasta scores: E(): 5.5e-33, 43.27% id in 238 aa.
 
 0.668
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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