STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mdlAATP-binding component of ABC transporter; Similar to Escherichia coli multidrug resistance-like ATP-binding protein MdlA or Mdl or b0448 SWALL:MDLA_ECOLI (SWALL:P77265) (590 aa) fasta scores: E(): 2.2e-169, 76.45% id in 582 aa; multidrug resistance-like ATP-binding protein mdla. (589 aa)    
Predicted Functional Partners:
mdlB
ATP-binding component of ABC transporter; Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 multidrug resistance-like ATP-binding protein mdlb mdlb or mdl or b0449 or c0566 or z0559 or ecs0503 SWALL:MDLB_ECOLI (SWALL:P75706) (593 aa) fasta scores: E(): 1e-165, 74.61% id in 583 aa.
 
 
0.984
pstB-2
Phosphate transport ATP-binding protein; Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphate importer (TC 3.A.1.7) family.
 
     
0.895
aapP
Similar to Rhizobium leguminosarum general L-amino acid transport ATP-binding protein AapP SWALL:AAPP_RHILV (SWALL:Q52815) (257 aa) fasta scores: E(): 8.6e-70, 75.1% id in 245 aa, and to Escherichia coli hypothetical amino-acid ABC transporter ATP-binding protein yhdz yhdz or b3271 SWALL:YHDZ_ECOLI (SWALL:P45769) (252 aa) fasta scores: E(): 7.3e-81, 85.77% id in 253 aa.
 
     
0.813
afuC
Ferric ABC transporter ATP-binding protein; Part of the ABC transporter complex FbpABC involved in Fe(3+) ions import. Responsible for energy coupling to the transport system.
 
 
   
0.725
cfa6
Similar to Pseudomonas syringae type I polyketide synthase Cfa6 SWALL:Q9Z3T9 (EMBL:AF098795) (2731 aa) fasta scores: E(): 0, 60.14% id in 2725 aa, and to Polyangium cellulosum Soraphen polyketide synthase A SorA SWALL:Q9ADL6 (EMBL:U24241) (6315 aa) fasta scores: E(): 0, 43.21% id in 2277 aa.
  
 0.658
ECA0705
Partial CDS. Similar to an internal region of Agrobacterium tumefaciens non-ribosomal peptide synthetase MtaD or atu3682 or agr_l_2311 SWALL:Q8U9P4 (EMBL:AE009297) (2399 aa) fasta scores: E(): 0.00074, 32.99% id in 97 aa, and to Anabaena sp. peptide synthetase all2648 SWALL:Q8YTR5 (EMBL:AP003590) (2588 aa) fasta scores: E(): 0.0032, 34.4% id in 93 aa.
  
 
 0.641
ECA2468
Putative exported protein; Similar to Salmonella typhimurium putative outer membrane protein ycfr or stm1214 SWALL:Q8ZQ03 (EMBL:AE008753) (85 aa) fasta scores: E(): 2.6e-06, 48.23% id in 85 aa, and to Escherichia coli, Escherichia coli O6, and Shigella flexneri hypothetical protein ybij precursor ybij or b0802 or c0886 or sf0752 SWALL:YBIJ_ECOLI (SWALL:P41038) (86 aa) fasta scores: E(): 1.3e-05, 52.32% id in 86 aa.
  
     0.614
proV
Similar to Escherichia coli glycine betaine/L-proline transport ATP-binding protein ProV or b2677 SWALL:PROV_ECOLI (SWALL:P14175) (400 aa) fasta scores: E(): 2e-112, 80.95% id in 399 aa.
 
     
0.610
astC
Putative sulfate ester transporter, ATP-binding component; Similar to Pseudomonas putida AtsC SWALL:Q9WWU7 (EMBL:AF126201) (287 aa) fasta scores: E(): 2.6e-52, 63.59% id in 239 aa, and to Bacillus subtilis putative aliphatic sulfonates transport ATP-binding protein SsuB SWALL:SSUB_BACSU (SWALL:P97027) (274 aa) fasta scores: E(): 1.4e-34, 43.72% id in 247 aa, and to.
 
     
0.586
ECA1157
Similar to Yersinia pestis probable asnc-family regulatory protein ypo3146 or y1038 SWALL:AAM84619 (EMBL:AJ414155) (153 aa) fasta scores: E(): 1.1e-48, 80.13% id in 151 aa, and to Salmonella typhimurium, and Salmonella typhi putative transcriptional regulator ybao or stm0459 or sty0502 SWALL:Q8XGC9 (EMBL:AE008717) (152 aa) fasta scores: E(): 8.9e-47, 78.14% id in 151 aa.
  
    0.582
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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