STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mdlBATP-binding component of ABC transporter; Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 multidrug resistance-like ATP-binding protein mdlb mdlb or mdl or b0449 or c0566 or z0559 or ecs0503 SWALL:MDLB_ECOLI (SWALL:P75706) (593 aa) fasta scores: E(): 1e-165, 74.61% id in 583 aa. (591 aa)    
Predicted Functional Partners:
mdlA
ATP-binding component of ABC transporter; Similar to Escherichia coli multidrug resistance-like ATP-binding protein MdlA or Mdl or b0448 SWALL:MDLA_ECOLI (SWALL:P77265) (590 aa) fasta scores: E(): 2.2e-169, 76.45% id in 582 aa; multidrug resistance-like ATP-binding protein mdla.
 
 
0.984
ECA4478
Amino acid ABC transporter, ATP-binding protein; Similar to Escherichia coli, and Escherichia coli O157:H7 glutamate/aspartate transport ATP-binding protein GltL or b0652 or z0802 or ecs0691 SWALL:GLTL_ECOLI (SWALL:P41076) (241 aa) fasta scores: E(): 5.3e-49, 61.66% id in 240 aa.
 
     
0.717
ECA2468
Putative exported protein; Similar to Salmonella typhimurium putative outer membrane protein ycfr or stm1214 SWALL:Q8ZQ03 (EMBL:AE008753) (85 aa) fasta scores: E(): 2.6e-06, 48.23% id in 85 aa, and to Escherichia coli, Escherichia coli O6, and Shigella flexneri hypothetical protein ybij precursor ybij or b0802 or c0886 or sf0752 SWALL:YBIJ_ECOLI (SWALL:P41038) (86 aa) fasta scores: E(): 1.3e-05, 52.32% id in 86 aa.
  
     0.668
cfa6
Similar to Pseudomonas syringae type I polyketide synthase Cfa6 SWALL:Q9Z3T9 (EMBL:AF098795) (2731 aa) fasta scores: E(): 0, 60.14% id in 2725 aa, and to Polyangium cellulosum Soraphen polyketide synthase A SorA SWALL:Q9ADL6 (EMBL:U24241) (6315 aa) fasta scores: E(): 0, 43.21% id in 2277 aa.
  
 0.658
ECA4414
Similar to Yersinia pestis putative exported protein ypo2521 or y1667 SWALL:Q8ZDN9 (EMBL:AJ414152) (86 aa) fasta scores: E(): 3.5e-15, 66.27% id in 86 aa, and to Salmonella typhimurium, and Salmonella typhi putative periplasmic protein ybij or stm0823 or sty0860 SWALL:Q8XFN7 (EMBL:AE008734) (86 aa) fasta scores: E(): 8.1e-14, 59.3% id in 86 aa.
  
     0.653
ECA0705
Partial CDS. Similar to an internal region of Agrobacterium tumefaciens non-ribosomal peptide synthetase MtaD or atu3682 or agr_l_2311 SWALL:Q8U9P4 (EMBL:AE009297) (2399 aa) fasta scores: E(): 0.00074, 32.99% id in 97 aa, and to Anabaena sp. peptide synthetase all2648 SWALL:Q8YTR5 (EMBL:AP003590) (2588 aa) fasta scores: E(): 0.0032, 34.4% id in 93 aa.
  
 
 0.641
ECA1157
Similar to Yersinia pestis probable asnc-family regulatory protein ypo3146 or y1038 SWALL:AAM84619 (EMBL:AJ414155) (153 aa) fasta scores: E(): 1.1e-48, 80.13% id in 151 aa, and to Salmonella typhimurium, and Salmonella typhi putative transcriptional regulator ybao or stm0459 or sty0502 SWALL:Q8XGC9 (EMBL:AE008717) (152 aa) fasta scores: E(): 8.9e-47, 78.14% id in 151 aa.
  
    0.577
ECA1553
Putative transposase (partial); Partial CDS. Similar to the C-terminal region of Photorhabdus luminescens transposase Tnp SWALL:AAN64216 (EMBL:AY144118) (328 aa) fasta scores: E(): 0.00016, 32.39% id in 142 aa, and to Salmonella typhimurium putative transposase stm0479 SWALL:Q8ZRA4 (EMBL:AE008718) (311 aa) fasta scores: E(): 1.9e-09, 32.03% id in 128 aa.
  
     0.555
smp
Putative membrane protein; Similar to Escherichia coli, and Shigella flexneri protein Smp precursor Smp or b4387 or sf4419 SWALL:SMP_ECOLI (SWALL:P18838) (214 aa) fasta scores: E(): 3.9e-52, 65.72% id in 213 aa.
  
     0.549
metN2
ABC transporter ATP-binding protein; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system.
 
     
0.506
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
Server load: low (36%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.