STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Cooccurrence
Coexpression
Experiments
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[Homology]
Score
rpmE2Putative 50S ribosomal protein L31 (second copy); Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 50s ribosomal protein l31 type b-1 RpmE2 or YkgM or b0296 or c0407 or z0364 or ecs0327 SWALL:R31B_ECOLI (SWALL:P71302) (87 aa) fasta scores: E(): 2.5e-20, 67.5% id in 80 aa. (82 aa)    
Predicted Functional Partners:
rpmJ2
Similar to Salmonella typhimurium, and Salmonella typhi 50S ribosomal protein L36 2 rpmj2 or stm0470 or sty0513 SWALL:R362_SALTY (SWALL:Q8XF38) (46 aa) fasta scores: E(): 6.8e-14, 71.73% id in 46 aa; Belongs to the bacterial ribosomal protein bL36 family.
 
 
 0.987
rpmB
50S ribosomal protein L28; Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri 50S ribosomal protein L28 RpmB or b3637 or c4461 or z5061 or ecs4512 or sf3676 SWALL:RL28_ECOLI (SWALL:P02428) (77 aa) fasta scores: E(): 3.3e-29, 93.5% id in 77 aa; Belongs to the bacterial ribosomal protein bL28 family.
 
 
 0.984
rpmG
50S ribosomal protein L33; Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, Salmonella typhimurium, Salmonella typhi, and Shigella flexneri 50S ribosomal protein L33 SWALL:RL33_ECOLI (SWALL:P02436) (54 aa) fasta scores: E(): 1.6e-19, 96.29% id in 54 aa; Belongs to the bacterial ribosomal protein bL33 family.
 
 
 0.974
rpsT
30S ribosomal protein S20; Binds directly to 16S ribosomal RNA.
  
 
 0.970
rplS
50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.
  
 
 0.963
rpsP
30S ribosomal protein S16; Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri 30S ribosomal protein S16 RpsP or b2609 or c3130 or z3903 or ecs3472 or sf2669 SWALL:RS16_ECOLI (SWALL:P02372) (82 aa) fasta scores: E(): 5.4e-24, 78.04% id in 82 aa; Belongs to the bacterial ribosomal protein bS16 family.
  
 
 0.963
rpmF
50S ribosomal protein L32; Similar to Escherichia coli, Escherichia coli O157:H7, Salmonella typhimurium, Salmonella typhi, and Shigella flexneri 50S ribosomal protein L32 RpmF or b1089 or z1728 or ecs1467 or stm1191 or sty1230 or sf1093 SWALL:RL32_ECOLI (SWALL:P02435) (56 aa) fasta scores: E(): 2.5e-18, 87.5% id in 56 aa; Belongs to the bacterial ribosomal protein bL32 family.
  
 
 0.962
rplU
50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.
  
 
 0.959
rpsR
30S ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family.
  
 
 0.957
rplM
50S ribosomal subunit protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.
  
 
 0.956
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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