Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ECA1174Putative membrane protein; Similar to Yersinia pestis putative gene 58 y1058 SWALL:AAM84639 (EMBL:AE013709) (126 aa) fasta scores: E(): 6.6e-40, 77.23% id in 123 aa, and to Salmonella typhimurium, and Salmonella typhi putative phage gene 58 yban or stm0482 or sty0526 SWALL:Q8XGD2 (EMBL:AE008718) (125 aa) fasta scores: E(): 3.2e-38, 73.17% id in 123 aa. (133 aa)    
Predicted Functional Partners:
exbB
Biopolymer transport protein; Similar to Escherichia coli, and Escherichia coli O157:H7 biopolymer transport ExbB protein ExbB or b3006 or z4359 or ecs3890 SWALL:EXBB_ECOLI (SWALL:P18783) (244 aa) fasta scores: E(): 9.3e-57, 75.2% id in 242 aa.
   
    0.551
apt
Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis.
       0.539
priC
Similar to Escherichia coli primosomal replication protein N'' PriC or b0467 SWALL:PRIC_ECOLI (SWALL:P23862) (174 aa) fasta scores: E(): 1.2e-14, 40.11% id in 172 aa.
       0.514
dnaX
DNA polymerase III subunit tau; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity.
       0.446
ECA1172
Similar to Yersinia pestis hypothetical protein Ypo3128 SWALL:Q8ZC92 (EMBL:AJ414155) (51 aa) fasta scores: E(): 2e-09, 60.78% id in 51 aa, and to Escherichia coli O6 hypothetical protein ybam or c0585 SWALL:AAN79063 (EMBL:AE016756) (53 aa) fasta scores: E(): 6e-09, 62.26% id in 53 aa.
       0.436
ECA1177
Conserved hypothetical protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection.
       0.400
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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