STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA1187Similar to Escherichia coli O157:H7 putative carbon starvation protein yjiy or z5953 or ecs5313 SWALL:Q8XB65 (EMBL:AE005666) (721 aa) fasta scores: E(): 0, 87.44% id in 717 aa, and to Shigella flexneri putative carbon starvation protein yjiy or sf4372 SWALL:AAN45788 (EMBL:AE015443) (721 aa) fasta scores: E(): 0, 87.44% id in 717 aa. (717 aa)    
Predicted Functional Partners:
ECA1188
Conserved hypothetical protein; Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri hypothetical protein yjix or b4353 or c5428 or z5952 or ecs5312 or sf4371 SWALL:YJIX_ECOLI (SWALL:P39395) (67 aa) fasta scores: E(): 4.2e-23, 83.58% id in 67 aa, and to Salmonella typhimurium, and Salmonella typhi putative cytoplasmic protein yjix or stm4531 or sty4889 SWALL:Q8XF65 (EMBL:AE008913) (67 aa) fasta scores: E(): 1.1e-22, 83.58% id in 67 aa.
 
  
 0.949
ECA1189
Similar to Escherichia coli hypothetical protein yjia or b4352 SWALL:YJIA_ECOLI (SWALL:P24203) (318 aa) fasta scores: E(): 1e-81, 67.93% id in 315 aa, and to Salmonella typhimurium putative cobalamin synthesis protein yjia or stm4530 SWALL:Q8ZJY6 (EMBL:AE008913) (318 aa) fasta scores: E(): 3.6e-81, 68.88% id in 315 aa.
  
  
 0.635
ECA1186
Hypothetical protein; No significant database matches.
       0.408
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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