STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA1188Conserved hypothetical protein; Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri hypothetical protein yjix or b4353 or c5428 or z5952 or ecs5312 or sf4371 SWALL:YJIX_ECOLI (SWALL:P39395) (67 aa) fasta scores: E(): 4.2e-23, 83.58% id in 67 aa, and to Salmonella typhimurium, and Salmonella typhi putative cytoplasmic protein yjix or stm4531 or sty4889 SWALL:Q8XF65 (EMBL:AE008913) (67 aa) fasta scores: E(): 1.1e-22, 83.58% id in 67 aa. (68 aa)    
Predicted Functional Partners:
ECA1189
Similar to Escherichia coli hypothetical protein yjia or b4352 SWALL:YJIA_ECOLI (SWALL:P24203) (318 aa) fasta scores: E(): 1e-81, 67.93% id in 315 aa, and to Salmonella typhimurium putative cobalamin synthesis protein yjia or stm4530 SWALL:Q8ZJY6 (EMBL:AE008913) (318 aa) fasta scores: E(): 3.6e-81, 68.88% id in 315 aa.
 
  
 0.961
ECA1187
Similar to Escherichia coli O157:H7 putative carbon starvation protein yjiy or z5953 or ecs5313 SWALL:Q8XB65 (EMBL:AE005666) (721 aa) fasta scores: E(): 0, 87.44% id in 717 aa, and to Shigella flexneri putative carbon starvation protein yjiy or sf4372 SWALL:AAN45788 (EMBL:AE015443) (721 aa) fasta scores: E(): 0, 87.44% id in 717 aa.
 
  
 0.942
cstA
Similar to Escherichia coli carbon starvation protein A CstA or b0598 SWALL:CSTA_ECOLI (SWALL:P15078) (701 aa) fasta scores: E(): 8.8e-164, 60.67% id in 684 aa.
 
  
 0.856
ECA0941
Putative fimbrial chaperone; Similar to Proteus mirabilis chaperone protein PmfD SWALL:PMFD_PROMI (SWALL:P53520) (254 aa) fasta scores: E(): 8.9e-43, 46.72% id in 229 aa, and to Escherichia coli sfpd SWALL:Q933Y4 (EMBL:AJ131667) (243 aa) fasta scores: E(): 8e-41, 44.93% id in 247 aa, and to Escherichia coli chaperone protein PapD SWALL:PAPD_ECOLI (SWALL:P15319) (239 aa) fasta scores: E(): 2e-36, 42.98% id in 228 aa, and to Escherichia coli PrfD SWALL:CAD42028 (EMBL:AJ494981) (239 aa) fasta scores: E(): 2e-36, 42.98% id in 228 aa.
  
     0.519
ECA2733
Conserved hypothetical protein; Similar to Yersinia pestis putative cobalamin synthesis protein ypo1277 or y2906 SWALL:AAM86457 (EMBL:AJ414147) (327 aa) fasta scores: E(): 9.2e-90, 70.6% id in 330 aa, and to Salmonella typhimurium, and Salmonella typhi putative cobalamin synthesis protein yeir or stm2212 or sty2448 SWALL:Q8XFI7 (EMBL:AE008799) (328 aa) fasta scores: E(): 9.7e-83, 66.26% id in 329 aa.
  
  
 0.465
ECA0942
Putative outer membrane usher protein; Similar to Photorhabdus luminescens MrfC SWALL:Q93MT4 (EMBL:AF396083) (851 aa) fasta scores: E(): 6.4e-137, 43.95% id in 810 aa, and to Proteus mirabilis outer membrane usher protein PmfC precursor pmfC SWALL:PMFC_PROMI (SWALL:P53514) (828 aa) fasta scores: E(): 3e-132, 42.75% id in 807 aa, and to Escherichia coli outer membrane usher protein PapC SWALL:PAPC_ECOLI (SWALL:P07110) (836 aa) fasta scores: E(): 1.6e-126, 43.34% id in 849 aa.
  
     0.432
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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