STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA1191Similar to Salmonella typhi hypothetical protein Sty0541 SWALL:Q8Z8S7 (EMBL:AL627267) (159 aa) fasta scores: E(): 2.5e-43, 75.47% id in 159 aa, and to Escherichia coli O6 protein ybak or c0601 SWALL:AAN79079 (EMBL:AE016756) (159 aa) fasta scores: E(): 3e-42, 72.95% id in 159 aa; Belongs to the prolyl-tRNA editing family. YbaK/EbsC subfamily. (159 aa)    
Predicted Functional Partners:
ECA1192
Putative exported protein; Similar to Yersinia pestis hypothetical protein ypo3087 or y1091 SWALL:AAM84669 (EMBL:AJ414155) (269 aa) fasta scores: E(): 1.1e-62, 62.87% id in 264 aa, and to Escherichia coli O6 hypothetical protein ybap or c0602 SWALL:AAN79080 (EMBL:AE016756) (264 aa) fasta scores: E(): 6.8e-51, 52.49% id in 261 aa.
    
 0.887
proS
prolyl-tRNA synthetase; Catalyzes the attachment of proline to tRNA(Pro) in a two- step reaction: proline is first activated by ATP to form Pro-AMP and then transferred to the acceptor end of tRNA(Pro). As ProRS can inadvertently accommodate and process non-cognate amino acids such as alanine and cysteine, to avoid such errors it has two additional distinct editing activities against alanine. One activity is designated as 'pretransfer' editing and involves the tRNA(Pro)-independent hydrolysis of activated Ala-AMP. The other activity is designated 'posttransfer' editing and involves dea [...]
     
 0.483
metG
methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
     
 0.468
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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