STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ECA1195Similar to Yersinia pestis putative membrane protein ypo3084 or y1095 SWALL:Q8ZCA9 (EMBL:AJ414155) (149 aa) fasta scores: E(): 2.4e-35, 60% id in 150 aa, and to Escherichia coli, and Shigella flexneri hypothetical protein ybbj or b0488 or sf0433 SWALL:YBBJ_ECOLI (SWALL:P75709) (151 aa) fasta scores: E(): 2e-34, 59.73% id in 149 aa. (151 aa)    
Predicted Functional Partners:
ECA1196
Putative membrane protein; Similar to Yersinia pestis hypothetical protein ypo3083 or y1096 SWALL:Q8ZCB0 (EMBL:AJ414155) (304 aa) fasta scores: E(): 3.7e-94, 90.13% id in 304 aa, and to Salmonella typhimurium putative inner membrane protein ybbk or stm0501 SWALL:Q8ZR94 (EMBL:AE008719) (305 aa) fasta scores: E(): 2.8e-90, 86.09% id in 302 aa.
 
 
 0.989
hflK
Putative phage-related protein; HflC and HflK could encode or regulate a protease.
 
 
 0.532
hflC
Putative phage-related protein; HflC and HflK could regulate a protease.
 
 
 0.530
ECA1755
Putative membrane protein; Similar to Salmonella typhimurium, and Salmonella typhi putative inner membrane protein yccf or stm1074 or sty1096 SWALL:Q8XGG4 (EMBL:AE008746) (148 aa) fasta scores: E(): 8.5e-52, 82.99% id in 147 aa, and to Escherichia coli, and Shigella flexneri hypothetical protein yccf or b0961 or sf0963 SWALL:YCCF_ECOLI (SWALL:P37065) (148 aa) fasta scores: E(): 1.4e-51, 83.67% id in 147 aa.
   
    0.511
cdsA
Phosphatidate cytidylyltransferase; Similar to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri phosphatidate cytidylyltransferase cdsa or cds or b0175 or z0186 or ecs0177 or sf0165 SWALL:CDSA_ECOLI (SWALL:P06466) (249 aa) fasta scores: E(): 2.5e-74, 74.08% id in 247 aa; Belongs to the CDS family.
   
    0.460
ECA1197
Similar to Yersinia pestis putative iron-sulphur binding protein ypo1212 or y2976 SWALL:Q8ZGR9 (EMBL:AJ414147) (85 aa) fasta scores: E(): 4.7e-17, 60% id in 80 aa, and to Escherichia coli, and Escherichia coli O6 hypothetical ferredoxin-like protein yfae or b2236 or c2778 SWALL:YFAE_ECOLI (SWALL:P37910) (84 aa) fasta scores: E(): 2.2e-16, 58.02% id in 81 aa.
       0.429
nrdB
Similar to Escherichia coli, and Escherichia coli O157:H7 ribonucleoside-diphosphate reductase 1 beta chain NrdB or FtsB or b2235 or z3491 or ecs3118 SWALL:RIR2_ECOLI (SWALL:P00453) (375 aa) fasta scores: E(): 3.2e-139, 90.13% id in 375 aa.
       0.418
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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