STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA1208Probable short chain dehydrogenase; Similar to Rhizobium meliloti putative sdr family dehydrogenase protein rb0961 or smb21383 SWALL:Q92UX4 (EMBL:AL603645) (296 aa) fasta scores: E(): 7.1e-51, 57.04% id in 291 aa, and to Xanthomonas axonopodis short chain dehydrogenase xac0083 SWALL:Q8PR80 (EMBL:AE011631) (245 aa) fasta scores: E(): 1.4e-40, 55.83% id in 240 aa. (293 aa)    
Predicted Functional Partners:
ECA0705
Partial CDS. Similar to an internal region of Agrobacterium tumefaciens non-ribosomal peptide synthetase MtaD or atu3682 or agr_l_2311 SWALL:Q8U9P4 (EMBL:AE009297) (2399 aa) fasta scores: E(): 0.00074, 32.99% id in 97 aa, and to Anabaena sp. peptide synthetase all2648 SWALL:Q8YTR5 (EMBL:AP003590) (2588 aa) fasta scores: E(): 0.0032, 34.4% id in 93 aa.
  
 0.893
cfa6
Similar to Pseudomonas syringae type I polyketide synthase Cfa6 SWALL:Q9Z3T9 (EMBL:AF098795) (2731 aa) fasta scores: E(): 0, 60.14% id in 2725 aa, and to Polyangium cellulosum Soraphen polyketide synthase A SorA SWALL:Q9ADL6 (EMBL:U24241) (6315 aa) fasta scores: E(): 0, 43.21% id in 2277 aa.
 
 0.882
ECA0824
Similar to Rhodospirillum rubrum pyruvate-flavodoxin oxidoreductase NifJ SWALL:NIFJ_RHORU (SWALL:Q53046) (1191 aa) fasta scores: E(): 0, 54.73% id in 1182 aa, and to Escherichia coli probable pyruvate-flavodoxin oxidoreductase ydbk or b1378 SWALL:NIFJ_ECOLI (SWALL:P52647) (1174 aa) fasta scores: E(): 0, 78.79% id in 1174 aa. Also similar to ECA2957 (47.377% id. in 1182 aa overlap).
   
 0.852
ECA1207
Probable short chain dehydrogenase; Similar to Rhizobium meliloti putative sdr family dehydrogenase protein rb0962 or smb21384 SWALL:Q92UX3 (EMBL:AL603645) (247 aa) fasta scores: E(): 3e-56, 64.75% id in 244 aa, and to Agrobacterium tumefaciens oxidoreductase atu0864 or agr_c_1580 SWALL:Q8UH21 (EMBL:AE009052) (252 aa) fasta scores: E(): 2.7e-38, 48.38% id in 248 aa; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
  
  0.851
gltB
Similar to Escherichia coli glutamate synthase [NADPH] large chain precursor GltB or AspB SWALL:GLTB_ECOLI (SWALL:P09831) (1517 aa) fasta scores: E(): 0, 86.75% id in 1495 aa, and to Yersinia pestis glutamate synthase, large subunit GltB SWALL:AAM83722 (EMBL:AE013613) (1535 aa) fasta scores: E(): 0, 90.25% id in 1498 aa.
     
 0.703
nuoC
NADH-quinone oxidoreductase chain C/D; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; In the N-terminal section; belongs to the complex I 30 kDa subunit family.
   
   0.692
ECA4053
Putative short chain dehydrogenase; Similar to Agrobacterium tumefaciens dehydrogenase atu5210 or agr_pat_293 SWALL:Q8UKB3 (EMBL:AE008943) (259 aa) fasta scores: E(): 9.5e-62, 65.11% id in 258 aa, and to Rhizobium meliloti sma1629 protein ra0888 or sma1629 SWALL:Q92YJ2 (EMBL:AE007275) (259 aa) fasta scores: E(): 1.4e-64, 70.86% id in 254 aa.
  
     0.690
cfa7
Similar to Pseudomonas syringae type I polyketide synthase Cfa7 SWALL:Q9Z3T8 (EMBL:AF098795) (2066 aa) fasta scores: E(): 0, 52.6% id in 2091 aa, and to Streptomyces coelicolor putative type I polyketide synthase sco6275 SWALL:CAD55506 (EMBL:AL939127) (4557 aa) fasta scores: E(): 3e-183, 44.33% id in 1845 aa.
  
 0.679
entB
Enterobactin synthetase component B (isochorismatase); Similar to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri isochorismatase EntB or EntG or b0595 or z0737 or ecs0634 or sf0509 SWALL:ENTB_ECOLI (SWALL:P15048) (285 aa) fasta scores: E(): 1.1e-69, 63.63% id in 286 aa.
  
 
 0.558
ECA2289
Similar to Yersinia pestis putative short chain dehydrogenase ypo2215 SWALL:Q8ZEF8 (EMBL:AJ414151) (253 aa) fasta scores: E(): 4.9e-73, 75.49% id in 253 aa, and to Salmonella typhimurium, and Salmonella typhi putative oxoacyl- ycik or stm1717 or sty1333 SWALL:Q8XGU5 (EMBL:AE008776) (253 aa) fasta scores: E(): 1.2e-71, 74.3% id in 253 aa.
  
     0.531
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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