STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tesASimilar to Escherichia coli, and Escherichia coli O6 acyl-CoA thioesterase I precursor TesA or ApeA or PldC or b0494 or c0615 SWALL:TESA_ECOLI (SWALL:P29679) (208 aa) fasta scores: E(): 7e-57, 67.4% id in 227 aa. (227 aa)    
Predicted Functional Partners:
ECA1224
Putative membrane protein; Similar to Yersinia pestis putative permease ypo3078 SWALL:Q8ZCB5 (EMBL:AJ414155) (809 aa) fasta scores: E(): 0, 75.24% id in 808 aa, and to Escherichia coli hypothetical protein ybbp or b0496 SWALL:YBBP_ECOLI (SWALL:P77504) (804 aa) fasta scores: E(): 0, 69.87% id in 810 aa.
 
     0.902
ECA1223
Similar to Yersinia pestis putative ABC transporter ATP-binding protein ypo3079 or y1100 SWALL:Q8ZCB4 (EMBL:AJ414155) (228 aa) fasta scores: E(): 1.2e-52, 81.35% id in 177 aa, and to Salmonella typhimurium, and Salmonella typhi putative ABC superfamily ybba or stm0507 or sty0553 SWALL:Q8XFS8 (EMBL:AE008719) (228 aa) fasta scores: E(): 3.2e-49, 76.27% id in 177 aa.
 
     0.821
ECA1221
Similar to Yersinia pestis probable short-chain dehydrogenase ypo3081 or y1098 SWALL:Q8ZCB2 (EMBL:AJ414155) (258 aa) fasta scores: E(): 5.7e-78, 81.64% id in 256 aa, and to Salmonella typhimurium, and Salmonella typhi putative oxidoreductase ybbo or stm0505 or sty0551 SWALL:Q8XGS4 (EMBL:AE008719) (256 aa) fasta scores: E(): 2.2e-67, 68.23% id in 255 aa; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
    0.771
cfa6
Similar to Pseudomonas syringae type I polyketide synthase Cfa6 SWALL:Q9Z3T9 (EMBL:AF098795) (2731 aa) fasta scores: E(): 0, 60.14% id in 2725 aa, and to Polyangium cellulosum Soraphen polyketide synthase A SorA SWALL:Q9ADL6 (EMBL:U24241) (6315 aa) fasta scores: E(): 0, 43.21% id in 2277 aa.
  
  
 0.570
cfa7
Similar to Pseudomonas syringae type I polyketide synthase Cfa7 SWALL:Q9Z3T8 (EMBL:AF098795) (2066 aa) fasta scores: E(): 0, 52.6% id in 2091 aa, and to Streptomyces coelicolor putative type I polyketide synthase sco6275 SWALL:CAD55506 (EMBL:AL939127) (4557 aa) fasta scores: E(): 3e-183, 44.33% id in 1845 aa.
  
  
 0.519
ECA1220
Similar to Yersinia pestis putative thioredoxin ypo3082 or y1097 SWALL:Q8ZCB1 (EMBL:AJ414155) (289 aa) fasta scores: E(): 1e-69, 71.93% id in 285 aa, and to Escherichia coli hypothetical protein ybbn or b0492 SWALL:YBBN_ECOLI (SWALL:P77395) (284 aa) fasta scores: E(): 3.8e-68, 70.96% id in 279 aa.
  
    0.468
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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