STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA1224Putative membrane protein; Similar to Yersinia pestis putative permease ypo3078 SWALL:Q8ZCB5 (EMBL:AJ414155) (809 aa) fasta scores: E(): 0, 75.24% id in 808 aa, and to Escherichia coli hypothetical protein ybbp or b0496 SWALL:YBBP_ECOLI (SWALL:P77504) (804 aa) fasta scores: E(): 0, 69.87% id in 810 aa. (809 aa)    
Predicted Functional Partners:
ECA1223
Similar to Yersinia pestis putative ABC transporter ATP-binding protein ypo3079 or y1100 SWALL:Q8ZCB4 (EMBL:AJ414155) (228 aa) fasta scores: E(): 1.2e-52, 81.35% id in 177 aa, and to Salmonella typhimurium, and Salmonella typhi putative ABC superfamily ybba or stm0507 or sty0553 SWALL:Q8XFS8 (EMBL:AE008719) (228 aa) fasta scores: E(): 3.2e-49, 76.27% id in 177 aa.
 
 
 
 0.967
tesA
Similar to Escherichia coli, and Escherichia coli O6 acyl-CoA thioesterase I precursor TesA or ApeA or PldC or b0494 or c0615 SWALL:TESA_ECOLI (SWALL:P29679) (208 aa) fasta scores: E(): 7e-57, 67.4% id in 227 aa.
 
 
   0.965
macB
Macrolide-specific ABC-type efflux carrier; Part of the tripartite efflux system MacAB-TolC. MacB is a non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the inner membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides.
  
 
 0.876
ECA1578
Conserved hypothetical protein; Similar to Yersinia pestis nucleoprotein/polynucleotide-associated enzyme y2589 SWALL:AAM86144 (EMBL:AE013861) (179 aa) fasta scores: E(): 8.1e-50, 93.29% id in 179 aa, and to Salmonella typhimurium, and Salmonella typhi putative cytoplasmic protein stm4192 or sty4409 SWALL:Q8XF14 (EMBL:AE008896) (179 aa) fasta scores: E(): 3.5e-48, 88.26% id in 179 aa.
 
     0.727
lolD
Lipoprotein releasing system ATP-binding protein; Part of the ABC transporter complex LolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone, LolA. Responsible for the formation of the LolA-lipoprotein complex in an ATP-dependent manner.
  
 
 0.584
ECA1221
Similar to Yersinia pestis probable short-chain dehydrogenase ypo3081 or y1098 SWALL:Q8ZCB2 (EMBL:AJ414155) (258 aa) fasta scores: E(): 5.7e-78, 81.64% id in 256 aa, and to Salmonella typhimurium, and Salmonella typhi putative oxidoreductase ybbo or stm0505 or sty0551 SWALL:Q8XGS4 (EMBL:AE008719) (256 aa) fasta scores: E(): 2.2e-67, 68.23% id in 255 aa; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
     
 0.515
ECA1515
ABC transporter ATP binding protein; Similar to Yersinia pestis similar to many ypo1946 or y2364 SWALL:AAM85922 (EMBL:AL031866) (237 aa) fasta scores: E(): 4.4e-66, 80.85% id in 235 aa, and to Pasteurella multocida hypothetical protein Pm0448 SWALL:Q9CNI3 (EMBL:AE006080) (227 aa) fasta scores: E(): 1.6e-59, 80% id in 220 aa.
  
 
 0.424
ECA4128
Similar to Pseudomonas putida ABC transporter, ATP-binding protein, putative pp2317 SWALL:AAN67930 (EMBL:AE016782) (228 aa) fasta scores: E(): 5.5e-24, 42.85% id in 224 aa, and to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri hypothetical ABC transporter ATP-binding protein ybba or b0495 or z0648 or ecs0557 or sf0439 SWALL:AAN42094 (EMBL:AE000155) (228 aa) fasta scores: E(): 3.7e-24, 44.09% id in 220 aa.
  
 
 0.424
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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