STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ECA1248Putative membrane protein; No significant database matches. (78 aa)    
Predicted Functional Partners:
hyfB
Hydrogenase-4 component B; Similar to Escherichia coli hydrogenase-4 component B HyfB or b2482 SWALL:HYFB_ECOLI (SWALL:P23482) (672 aa) fasta scores: E(): 5.6e-158, 61.81% id in 673 aa.
       0.533
hyfA
Similar to Escherichia coli hydrogenase-4 component A HyfA or b2481 SWALL:HYFA_ECOLI (SWALL:P23481) (205 aa) fasta scores: E(): 4.1e-36, 49.75% id in 207 aa, and to Escherichia coli, Escherichia coli O6, and Shigella flexneri formate hydrogenlyase subunit 2 hycb or hevb or b2724 or c3284 or sf2741 SWALL:HYCB_ECOLI (SWALL:P16428) (203 aa) fasta scores: E(): 5.2e-37, 50.24% id in 205 aa.
       0.533
hyfC
Similar to Escherichia coli hydrogenase-4 component C HyfC or b2483 SWALL:HYFC_ECOLI (SWALL:P77858) (315 aa) fasta scores: E(): 4.9e-85, 73.35% id in 304 aa.
       0.530
hyfD
Similar to Escherichia coli hydrogenase-4 component D HyfD or b2484 SWALL:HYFD_ECOLI (SWALL:P77416) (479 aa) fasta scores: E(): 1.2e-133, 72.65% id in 479 aa.
       0.510
hycI
Hydrogenase 3 maturation protease; Similar to Escherichia coli, and Escherichia coli O157:H7 hydrogenase 3 maturation protease HycI or b2717 or z4025 or ecs3573 SWALL:HYCI_ECOLI (SWALL:Q57451) (155 aa) fasta scores: E(): 1.5e-37, 70.58% id in 153 aa.
       0.500
hyfJ
Hydrogenase-4 component J; Similar to Escherichia coli hydrogenase-4 component J HyfJ or b2490 SWALL:HYFJ_ECOLI (SWALL:P77453) (137 aa) fasta scores: E(): 2.4e-23, 50% id in 136 aa.
       0.500
hyfI
Similar to Escherichia coli hydrogenase-4 component I HyfI or b2489 SWALL:HYFI_ECOLI (SWALL:P77668) (252 aa) fasta scores: E(): 5.7e-68, 72.06% id in 247 aa.
       0.500
hyfH
Similar to Escherichia coli hydrogenase-4 component H HyfH or b2488 SWALL:HYFH_ECOLI (SWALL:P77423) (181 aa) fasta scores: E(): 3.7e-39, 61.44% id in 166 aa.
       0.500
hyfG
Similar to Escherichia coli hydrogenase-4 component G HyfG or b2487 SWALL:HYFG_ECOLI (SWALL:P77329) (555 aa) fasta scores: E(): 3.1e-128, 78.03% id in 569 aa.
       0.500
hyfF
Hydrogenase-4 component F; Similar to Escherichia coli hydrogenase-4 component F HyfF or b2486 SWALL:HYFF_ECOLI (SWALL:P77437) (526 aa) fasta scores: E(): 1.1e-133, 67.12% id in 508 aa.
       0.500
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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