STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA1275Similar to Anabaena sp. ferrichrome-iron receptor all2610 SWALL:Q8YTV3 (EMBL:AP003590) (857 aa) fasta scores: E(): 3.4e-38, 27.33% id in 684 aa, and to Pseudomonas putida outer membrane ferric siderophore receptor, putative pp3155 SWALL:AAN68763 (EMBL:AE016785) (709 aa) fasta scores: E(): 2.2e-29, 27.35% id in 691 aa. (791 aa)    
Predicted Functional Partners:
entB
Enterobactin synthetase component B (isochorismatase); Similar to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri isochorismatase EntB or EntG or b0595 or z0737 or ecs0634 or sf0509 SWALL:ENTB_ECOLI (SWALL:P15048) (285 aa) fasta scores: E(): 1.1e-69, 63.63% id in 286 aa.
   
  
 0.846
ECA1539
Similar to Pseudomonas aeruginosa probable transmembrane sensor pa3409 SWALL:Q9HYJ6 (EMBL:AE004762) (328 aa) fasta scores: E(): 2.2e-40, 42.68% id in 328 aa, and to Pseudomonas putida transmembrane sensor, putative pp4607 SWALL:AAN70180 (EMBL:AE016791) (326 aa) fasta scores: E(): 2.6e-25, 36.13% id in 321 aa.
 
 
 0.752
ECA1273
Putative sensor protein; Similar to Escherichia coli protein FecR or b4292 SWALL:FECR_ECOLI (SWALL:P23485) (317 aa) fasta scores: E(): 2.9e-18, 30.09% id in 309 aa, and to Pseudomonas aeruginosa probable transmembrane sensor pa0471 SWALL:Q9I647 (EMBL:AE004485) (323 aa) fasta scores: E(): 8.9e-27, 32.58% id in 313 aa.
 
 
 0.743
ECA0058
Transmembrane sensor; Similar to Escherichia coli protein FecR or b4292 SWALL:FECR_ECOLI (SWALL:P23485) (317 aa) fasta scores: E(): 3.1e-33, 36.04% id in 319 aa.
 
 
 0.730
fecR
iron(III) dicitrate sensor protein; Similar to Escherichia coli protein FecR or b4292 SWALL:FECR_ECOLI (SWALL:P23485) (317 aa) fasta scores: E(): 7.6e-87, 69.55% id in 312 aa, and to Shigella flexneri 2a FecR SWALL:AAL08457 (EMBL:AF326777) (317 aa) fasta scores: E(): 7.6e-87, 69.55% id in 312 aa.
 
 
 0.701
ECA0814
Putative iron sensor protein; Similar to Escherichia coli protein FecR SWALL:FECR_ECOLI (SWALL:P23485) (317 aa) fasta scores: E(): 4.1e-27, 33.01% id in 315 aa, and to Pseudomonas putida PupR protein SWALL:Q52209 (EMBL:X77918) (324 aa) fasta scores: E(): 3.3e-23, 29.9% id in 321 aa, and to Bordetella avium RhuR SWALL:Q8L1U8 (EMBL:AY095952) (307 aa) fasta scores: E(): 3.3e-17, 27.12% id in 317 aa.
 
 
 0.685
sftP
TonB-dependent receptor; Similar to Pseudomonas putida SftP SWALL:Q9R9W7 (EMBL:AF126201) (778 aa) fasta scores: E(): 5e-33, 37.71% id in 753 aa, and to Xanthomonas axonopodis TonB-dependent receptor FyuA or xac1143 SWALL:Q8PND0 (EMBL:AE011742) (804 aa) fasta scores: E(): 1.7e-22, 23.65% id in 782 aa.
  
  
 0.629
ECA1276
ABC transporter ATP binding component; Similar to Bradyrhizobium japonicum Blr7537 protein SWALL:BAC52802 (EMBL:AP005962) (587 aa) fasta scores: E(): 2e-65, 34.16% id in 562 aa, and to Pasteurella multocida hypothetical protein Pm1072 SWALL:Q9CLX7 (EMBL:AE006148) (585 aa) fasta scores: E(): 4.2e-55, 33.39% id in 548 aa.
 
     0.620
ECA0475
TonB-dependent siderophore receptor protein; Similar to Escherichia coli colicin I receptor precursor CirA or Cir or FeuA or b2155 SWALL:CIRA_ECOLI (SWALL:P17315) (663 aa) fasta scores: E(): 9.5e-57, 36.61% id in 661 aa, and to Vibrio cholerae iron-regulated outer membrane virulence protein precursor IrgA or vc0475 SWALL:IRGA_VIBCH (SWALL:P27772) (652 aa) fasta scores: E(): 1.1e-48, 29.73% id in 676 aa.
  
  
 0.605
ECA0705
Partial CDS. Similar to an internal region of Agrobacterium tumefaciens non-ribosomal peptide synthetase MtaD or atu3682 or agr_l_2311 SWALL:Q8U9P4 (EMBL:AE009297) (2399 aa) fasta scores: E(): 0.00074, 32.99% id in 97 aa, and to Anabaena sp. peptide synthetase all2648 SWALL:Q8YTR5 (EMBL:AP003590) (2588 aa) fasta scores: E(): 0.0032, 34.4% id in 93 aa.
  
  
 0.591
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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