STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA1276ABC transporter ATP binding component; Similar to Bradyrhizobium japonicum Blr7537 protein SWALL:BAC52802 (EMBL:AP005962) (587 aa) fasta scores: E(): 2e-65, 34.16% id in 562 aa, and to Pasteurella multocida hypothetical protein Pm1072 SWALL:Q9CLX7 (EMBL:AE006148) (585 aa) fasta scores: E(): 4.2e-55, 33.39% id in 548 aa. (596 aa)    
Predicted Functional Partners:
ECA1275
Similar to Anabaena sp. ferrichrome-iron receptor all2610 SWALL:Q8YTV3 (EMBL:AP003590) (857 aa) fasta scores: E(): 3.4e-38, 27.33% id in 684 aa, and to Pseudomonas putida outer membrane ferric siderophore receptor, putative pp3155 SWALL:AAN68763 (EMBL:AE016785) (709 aa) fasta scores: E(): 2.2e-29, 27.35% id in 691 aa.
 
     0.620
ECA0705
Partial CDS. Similar to an internal region of Agrobacterium tumefaciens non-ribosomal peptide synthetase MtaD or atu3682 or agr_l_2311 SWALL:Q8U9P4 (EMBL:AE009297) (2399 aa) fasta scores: E(): 0.00074, 32.99% id in 97 aa, and to Anabaena sp. peptide synthetase all2648 SWALL:Q8YTR5 (EMBL:AP003590) (2588 aa) fasta scores: E(): 0.0032, 34.4% id in 93 aa.
      
 0.482
ECA0880
Putative ABC transporter ATP-binding protein; Similar to Pasteurella multocida hypothetical protein Pm0041 SWALL:Q9CPJ6 (EMBL:AE006038) (564 aa) fasta scores: E(): 7.9e-99, 48.01% id in 554 aa, and to Escherichia coli hypothetical ABC transporter ATP-binding protein YddA SWALL:YDDA_ECOLI (SWALL:P31826) (561 aa) fasta scores: E(): 5.7e-71, 38.24% id in 536 aa.
  
  
 
0.450
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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