STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA1278Conserved hypothetical protein (partial); Partial CDS. Similar to the C-terminal regions several proteins including Methanosarcina acetivorans hypothetical protein Ma0995 SWALL:Q8TS12 (EMBL:AE010765) (251 aa) fasta scores: E(): 3.7e-12, 61.29% id in 62 aa, and to Bacillus halodurans hypothetical protein Bh0315 SWALL:Q9KG01 (EMBL:AP001508) (237 aa) fasta scores: E(): 2.9e-08, 49.2% id in 63 aa. (72 aa)    
Predicted Functional Partners:
ECA1277
Hypothetical protein; No significant database matches.
       0.655
ECA1279
Similar to Agrobacterium tumefaciens hypothetical protein atu2406 or agr_c_4366 SWALL:Q8UCS7 (EMBL:AE009188) (85 aa) fasta scores: E(): 3.7e-16, 67.12% id in 73 aa, and to Ralstonia solanacearum hypothetical protein rsp1158 or rs05427 SWALL:Q8XQR3 (EMBL:AL646083) (82 aa) fasta scores: E(): 3.6e-15, 62.66% id in 75 aa.
       0.476
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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