Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ECA1279Similar to Agrobacterium tumefaciens hypothetical protein atu2406 or agr_c_4366 SWALL:Q8UCS7 (EMBL:AE009188) (85 aa) fasta scores: E(): 3.7e-16, 67.12% id in 73 aa, and to Ralstonia solanacearum hypothetical protein rsp1158 or rs05427 SWALL:Q8XQR3 (EMBL:AL646083) (82 aa) fasta scores: E(): 3.6e-15, 62.66% id in 75 aa. (75 aa)    
Predicted Functional Partners:
ECA1278
Conserved hypothetical protein (partial); Partial CDS. Similar to the C-terminal regions several proteins including Methanosarcina acetivorans hypothetical protein Ma0995 SWALL:Q8TS12 (EMBL:AE010765) (251 aa) fasta scores: E(): 3.7e-12, 61.29% id in 62 aa, and to Bacillus halodurans hypothetical protein Bh0315 SWALL:Q9KG01 (EMBL:AP001508) (237 aa) fasta scores: E(): 2.9e-08, 49.2% id in 63 aa.
       0.476
ECA1280
Putative phospholipase/Carboxylesterase family protein; Similar to Escherichia coli O6 hypothetical protein ypfh or c3001 SWALL:AAN81451 (EMBL:AE016764) (240 aa) fasta scores: E(): 9.1e-37, 50% id in 206 aa, and to Shigella flexneri orf, conserved hypothetical protein ypfh or sf2516 SWALL:AAN44019 (EMBL:AE015267) (240 aa) fasta scores: E(): 1.2e-36, 50% id in 206 aa.
       0.463
ECA1277
Hypothetical protein; No significant database matches.
       0.413
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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