STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
atoDSimilar to Escherichia coli acetate CoA-transferase alpha subunit AtoD or b2221 SWALL:ATOD_ECOLI (SWALL:P76458) (220 aa) fasta scores: E(): 3.9e-48, 61.46% id in 218 aa. (218 aa)    
Predicted Functional Partners:
atoA
Similar to Escherichia coli acetate CoA-transferase beta subunit AtoA or b2222 SWALL:ATOA_ECOLI (SWALL:P76459) (216 aa) fasta scores: E(): 1.4e-54, 70.33% id in 209 aa, and to Clostridium acetobutylicum butyrate-acetoacetate CoA-transferase subunit B CtfB or cap0164 SWALL:CTFB_CLOAB (SWALL:P23673) (221 aa) fasta scores: E(): 2.6e-44, 57.2% id in 215 aa.
 0.999
atoB
Similar to Clostridium acetobutylicum acetyl-CoA acetyltransferase ThlA or Thl or cac2873 SWALL:THLA_CLOAB (SWALL:P45359) (392 aa) fasta scores: E(): 9.5e-81, 59.48% id in 390 aa, and to Escherichia coli acetyl-CoA acetyltransferase AtoB or b2224 SWALL:ATOB_ECOLI (SWALL:P76461) (394 aa) fasta scores: E(): 1.2e-87, 64.01% id in 389 aa; Belongs to the thiolase-like superfamily. Thiolase family.
 
 
 0.986
fadB
Fatty oxidation complex alpha subunit [includes: enoyl-CoA hydratase; Involved in the aerobic and anaerobic degradation of long- chain fatty acids via beta-oxidation cycle. Catalyzes the formation of 3-oxoacyl-CoA from enoyl-CoA via L-3-hydroxyacyl-CoA. It can also use D-3-hydroxyacyl-CoA and cis-3-enoyl-CoA as substrate. In the C-terminal section; belongs to the 3-hydroxyacyl-CoA dehydrogenase family.
  
 
 0.960
fadJ
Putative fatty acid oxidation complex alpha subunit; Catalyzes the formation of a hydroxyacyl-CoA by addition of water on enoyl-CoA. Also exhibits 3-hydroxyacyl-CoA epimerase and 3- hydroxyacyl-CoA dehydrogenase activities; In the N-terminal section; belongs to the enoyl-CoA hydratase/isomerase family.
  
 
 0.960
adhE
Aldehyde-alcohol dehydrogenase; Similar to Escherichia coli, and Escherichia coli O157:H7 aldehyde-alcohol dehydrogenase [includes: alcohol dehydrogenase, acetaldehyde dehydrogenase, and pyruvate-formate-lyase deactivase AdhE or Ana or b1241 or z2016 or ecs1741 SWALL:ADHE_ECOLI (SWALL:P17547) (890 aa) fasta scores: E(): 0, 89.1% id in 890 aa; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family.
  
 
 0.946
nahO
Acetaldehyde dehydrogenase; Catalyzes the conversion of acetaldehyde to acetyl-CoA, using NAD(+) and coenzyme A. Is the final enzyme in the meta-cleavage pathway for the degradation of aromatic compounds.
    
  0.900
ECA2142
Urea amidolyase; Similar to the C-terminal region of Saccharomyces cerevisiae urea amidolyase [includes: urea carboxylase and allophanate hydrolase] Dur1,2 or ybr208c or ybr1448 SWALL:DUR1_YEAST (SWALL:P32528) (1835 aa) fasta scores: E(): 0, 52.92% id in 1213 aa, and to Pseudomonas fluorescens urea amidolyase homologue uahA SWALL:Q9XAV3 (EMBL:AJ243652) (1213 aa) fasta scores: E(): 0, 51.47% id in 1224 aa.
  
  
 0.603
ECA1286
Similar to Pseudomonas aeruginosa hypothetical protein Pa2886 SWALL:Q9HZW1 (EMBL:AE004714) (600 aa) fasta scores: E(): 1.4e-40, 34.88% id in 450 aa, and to Streptomyces coelicolor hypothetical protein sco4379 or scd10.11 SWALL:Q9K3W5 (EMBL:AL939119) (558 aa) fasta scores: E(): 2.3e-21, 34.24% id in 365 aa.
  
  
 0.540
ECA1285
Conserved hypothetical protein; Similar to the C-terminal regions of several hypothetical proteins including Pseudomonas aeruginosa hypothetical protein Pa2886 SWALL:Q9HZW1 (EMBL:AE004714) (600 aa) fasta scores: E(): 1.9e-06, 37% id in 100 aa, and to Mycobacterium tuberculosis hypothetical protein rv0976c or mtv044.04c or mt1003.1 SWALL:O86320 (EMBL:Z79700) (560 aa) fasta scores: E(): 0.00068, 35.29% id in 85 aa.
       0.525
cfa6
Similar to Pseudomonas syringae type I polyketide synthase Cfa6 SWALL:Q9Z3T9 (EMBL:AF098795) (2731 aa) fasta scores: E(): 0, 60.14% id in 2725 aa, and to Polyangium cellulosum Soraphen polyketide synthase A SorA SWALL:Q9ADL6 (EMBL:U24241) (6315 aa) fasta scores: E(): 0, 43.21% id in 2277 aa.
  
  
 0.469
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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