STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA1288Similar to Pseudomonas putida transcriptional regulator, LysR family pp2054 SWALL:AAN67668 (EMBL:AE016781) (297 aa) fasta scores: E(): 6.5e-28, 33.33% id in 297 aa, and to Escherichia coli hypothetical transcriptional regulator ybhd or b0768 SWALL:YBHD_ECOLI (SWALL:P52696) (317 aa) fasta scores: E(): 1.6e-26, 28.17% id in 291 aa. (299 aa)    
Predicted Functional Partners:
nac
Partial CDS. Similar to the N-terminal region of Escherichia coli nitrogen assimilation regulatory protein Nac or b1988 SWALL:NAC_ECOLI (SWALL:Q47005) (305 aa) fasta scores: E(): 1.4e-23, 77.77% id in 90 aa.
  
     0.771
ECA3843
Similar to Burkholderia cepacia putative transcriptional regulator CeoR SWALL:Q8VL17 (EMBL:AY008288) (334 aa) fasta scores: E(): 1e-47, 45.27% id in 296 aa, and to Salmonella typhi putative transcriptional regulator sty1386 SWALL:Q8Z7A3 (EMBL:AL627270) (301 aa) fasta scores: E(): 1.3e-47, 45.36% id in 302 aa; Belongs to the LysR transcriptional regulatory family.
  
     0.680
ECA3634
Similar to Brucella melitensis transcriptional regulatory protein, LysR family bmeii1135 SWALL:Q8YAW6 (EMBL:AE009745) (297 aa) fasta scores: E(): 5.1e-26, 30.66% id in 287 aa, and to Rhizobium meliloti putative transcription regulator protein r02876 or smc02984 SWALL:Q92LY6 (EMBL:AL591792) (297 aa) fasta scores: E(): 2.4e-28, 33.33% id in 288 aa.
  
     0.671
ECA0905
Similar to Yersinia pestis putative LysR-family transcriptional regulatory protein ypo2979 SWALL:Q8ZCK5 (EMBL:AJ414154) (292 aa) fasta scores: E(): 1.7e-70, 64.08% id in 284 aa, and to Salmonella typhi possible regulatory protein sty3165 SWALL:Q8Z3Z7 (EMBL:AL627277) (287 aa) fasta scores: E(): 3.8e-56, 55.35% id in 280 aa.
  
     0.653
ECA3376
LysR-family transcriptional regulator; Similar to Rhizobium loti transcription regulator mll3011 SWALL:Q98H66 (EMBL:AP003001) (292 aa) fasta scores: E(): 2.1e-49, 48.61% id in 288 aa, and to Pseudomonas putida transcriptional regulator, LysR family pp3811 SWALL:Q88GB3 (EMBL:AE016788) (294 aa) fasta scores: E(): 1e-34, 41.15% id in 294 aa; Belongs to the LysR transcriptional regulatory family.
  
     0.630
ECA3561
Similar to Streptomyces antibioticus transcriptional regulatory protein AraB AbaB SWALL:ARAB_STRAT (SWALL:P52659) (301 aa) fasta scores: E(): 4e-16, 32.78% id in 302 aa, and to Streptomyces coelicolor putative LysR-family transcriptional regulator sco6801 or sc1a2.10 SWALL:Q9L231 (EMBL:AL939129) (300 aa) fasta scores: E(): 1.2e-09, 30.9% id in 288 aa.
  
     0.618
ECA2973
LysR-family transcriptional regulator; Similar to Rhizobium meliloti putative transcription regulator protein r02971 or smc03122 SWALL:Q92LQ9 (EMBL:AL591792) (315 aa) fasta scores: E(): 2.5e-28, 35.31% id in 286 aa, and to Brucella suis transcriptional regulator, LysR family bra0952 SWALL:AAN34123 (EMBL:AE014588) (304 aa) fasta scores: E(): 2e-27, 31.29% id in 294 aa; Belongs to the LysR transcriptional regulatory family.
  
     0.580
ECA4219
Similar to Rhizobium loti probable transcriptional regulator mlr0244 SWALL:Q98N89 (EMBL:AP002994) (308 aa) fasta scores: E(): 2.1e-52, 49.83% id in 295 aa, and to Ralstonia solanacearum probable transcription regulator protein rsp1146 or rs05458 SWALL:Q8XQS3 (EMBL:AL646083) (298 aa) fasta scores: E(): 2e-47, 47.49% id in 299 aa; Belongs to the LysR transcriptional regulatory family.
  
     0.569
ECA0068
Similar to Pseudomonas aeruginosa probable transcriptional regulator pa3225 SWALL:Q9HZ15 (EMBL:AE004745) (309 aa) fasta scores: E(): 1.4e-30, 38.11% id in 286 aa, and to Escherichia coli hypothetical transcriptional regulator YeeY SWALL:YEEY_ECOLI (SWALL:P76369) (309 aa) fasta scores: E(): 7.8e-10, 28.34% id in 247 aa; Belongs to the LysR transcriptional regulatory family.
  
     0.516
ECA3654
Similar to Yersinia pestis LysR-family transcriptional regulatory protein ypo0799 or y3187 SWALL:Q8ZHT5 (EMBL:AJ414144) (302 aa) fasta scores: E(): 3e-85, 71.38% id in 297 aa, and to Pseudomonas aeruginosa probable transcriptional regulator pa0056 SWALL:Q9I776 (EMBL:AE004445) (306 aa) fasta scores: E(): 5e-70, 61.27% id in 297 aa.
  
     0.477
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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