STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA1289Similar to Yersinia pestis putative membrane protein ypo3055 SWALL:Q8ZCD6 (EMBL:AJ414155) (64 aa) fasta scores: E(): 1.4e-19, 73.84% id in 65 aa, and to Salmonella typhimurium, and Salmonella typhi putative inner membrane protein stm2484 or sty2722 SWALL:Q8XF02 (EMBL:AE008812) (66 aa) fasta scores: E(): 5.5e-17, 66.12% id in 62 aa. (63 aa)    
Predicted Functional Partners:
ECA1292
Conserved hypothetical protein; Similar to Escherichia coli protein yffb or b2471 SWALL:YFFB_ECOLI (SWALL:P24178) (118 aa) fasta scores: E(): 8e-24, 61.15% id in 121 aa, and to Yersinia pestis hypothetical protein ypo3052 or y1428 SWALL:Q8ZCD9 (EMBL:AJ414155) (132 aa) fasta scores: E(): 1.1e-27, 67.5% id in 120 aa; Belongs to the ArsC family.
     
 0.799
dapE
Succinyl-diaminopimelate desuccinylase; Catalyzes the hydrolysis of N-succinyl-L,L-diaminopimelic acid (SDAP), forming succinate and LL-2,6-diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls; Belongs to the peptidase M20A family. DapE subfamily.
     
 0.787
ECA1290
Similar to Yersinia pestis putative carboxypeptidase ypo3054 or y1426 SWALL:Q8ZCD7 (EMBL:AJ414155) (225 aa) fasta scores: E(): 1.8e-65, 68.34% id in 218 aa, and to Pasteurella multocida hypothetical protein Pm1021 SWALL:Q9CM23 (EMBL:AE006143) (228 aa) fasta scores: E(): 8.7e-46, 51.13% id in 221 aa.
       0.786
ECA3261
Similar to Yersinia pestis putative membrane protein ypo2924 SWALL:Q8ZCP9 (EMBL:AJ414154) (215 aa) fasta scores: E(): 1.7e-62, 74.27% id in 206 aa, and to Salmonella typhimurium putatative phosphoserine phosphatase yfhb or stm2569 SWALL:Q8ZN27 (EMBL:AE008817) (211 aa) fasta scores: E(): 3e-62, 71.01% id in 207 aa.
  
     0.774
ECA0979
Putative exported protein; Similar to Salmonella typhimurium putative periplasmic protein yggn or stm3107 SWALL:Q8ZM42 (EMBL:AE008842) (239 aa) fasta scores: E(): 1.6e-48, 59.41% id in 239 aa, and to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 hypothetical protein yggn or b2958 or c3544 or z4303 or ecs3834 SWALL:YGGN_ECOLI (SWALL:P46143) (239 aa) fasta scores: E(): 1.8e-48, 58.99% id in 239 aa.
  
     0.773
ECA3332
Similar to Yersinia pestis putative exported protein ypo3410 or y0776 SWALL:Q8ZBJ9 (EMBL:AJ414157) (115 aa) fasta scores: E(): 1.6e-30, 69.29% id in 114 aa, and to Escherichia coli, and Escherichia coli O6 hypothetical protein yacc precursor yacc or b0122 or c0151 SWALL:YACC_ECOLI (SWALL:P23838) (115 aa) fasta scores: E(): 1.6e-27, 64.34% id in 115 aa.
  
     0.772
ECA0086
Similar to Yersinia pestis putative exported protein ypo4070 SWALL:Q8Z9W8 (EMBL:AJ414160) (241 aa) fasta scores: E(): 1.3e-39, 49.11% id in 226 aa, and to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri hypothetical protein YiaF SWALL:AAN45039 (EMBL:U00039) (276 aa) fasta scores: E(): 2.7e-33, 44.09% id in 220 aa.
  
     0.771
yfeE
Putative membrane protein; Similar to Yersinia pestis putative yfeabcd regulator YfeE or ypo2445 or y1891 SWALL:YFEE_YERPE (SWALL:Q56956) (184 aa) fasta scores: E(): 1.8e-48, 63.73% id in 182 aa, and to Salmonella typhimurium, and Salmonella typhi putative regulator ynib or stm1323 or sty1788 SWALL:Q8XFB7 (EMBL:AE008757) (178 aa) fasta scores: E(): 6.8e-47, 63.33% id in 180 aa.
  
     0.769
ECA4404
Similar to Yersinia pestis putative lipoprotein ypo4086 or y4103 SWALL:Q8Z9V4 (EMBL:AJ414160) (112 aa) fasta scores: E(): 2.8e-19, 55.35% id in 112 aa, and to Escherichia coli, and Shigella flexneri hypothetical protein yidq precursor yidq or b3688 or sf3775 SWALL:YIDQ_ECOLI (SWALL:P31454) (110 aa) fasta scores: E(): 1.2e-15, 46.55% id in 116 aa.
  
     0.768
ECA0881
Similar to Yersinia pestis putative lipoprotein ypo3026 SWALL:Q8ZCG5 (EMBL:AJ414155) (203 aa) fasta scores: E(): 3.1e-41, 57.92% id in 202 aa, and to Salmonella typhi putative lipoprotein sty2684 SWALL:Q8Z4V2 (EMBL:AL627274) (191 aa) fasta scores: E(): 3.8e-38, 56.31% id in 190 aa.
  
     0.766
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.