STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gltJSimilar to Escherichia coli, and Escherichia coli O6 glutamate/aspartate transport system permease protein GltJ or b0654 or c0738 SWALL:GLTJ_ECOLI (SWALL:P41074) (246 aa) fasta scores: E(): 5.8e-85, 88.61% id in 246 aa. (246 aa)    
Predicted Functional Partners:
gltL
Similar to Escherichia coli, and Escherichia coli O157:H7 glutamate/aspartate transport ATP-binding protein GltL or b0652 or z0802 or ecs0691 SWALL:GLTL_ECOLI (SWALL:P41076) (241 aa) fasta scores: E(): 4.5e-73, 87.55% id in 241 aa.
 
 0.998
gltK
Glutamate/aspartate transport system permease protein; Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 glutamate/aspartate transport system permease protein GltK or b0653 or c0737 or z0803 or ecs0692 SWALL:GLTK_ECOLI (SWALL:P41075) (224 aa) fasta scores: E(): 2.2e-73, 84.75% id in 223 aa.
 
 
 
0.998
gltI
Similar to Escherichia coli glutamate/aspartate periplasmic binding protein precursor HltI or b0655 SWALL:GLTI_ECOLI (SWALL:P37902) (302 aa) fasta scores: E(): 1.5e-88, 78.8% id in 302 aa.
 
 0.996
ECA4478
Amino acid ABC transporter, ATP-binding protein; Similar to Escherichia coli, and Escherichia coli O157:H7 glutamate/aspartate transport ATP-binding protein GltL or b0652 or z0802 or ecs0691 SWALL:GLTL_ECOLI (SWALL:P41076) (241 aa) fasta scores: E(): 5.3e-49, 61.66% id in 240 aa.
 
 0.917
ECA3539
Similar to Methanosarcina mazei glutamine transporter, ATP-binding protein GlnQ or mm1941 SWALL:Q8PVM2 (EMBL:AE013431) (240 aa) fasta scores: E(): 2e-55, 67.5% id in 240 aa, and to Oceanobacillus iheyensis glutamine ABC transporter ATP-binding protein ob1006 SWALL:Q8CUV1 (EMBL:AP004596) (240 aa) fasta scores: E(): 8.9e-55, 64.16% id in 240 aa.
 
 0.835
aapP
Similar to Rhizobium leguminosarum general L-amino acid transport ATP-binding protein AapP SWALL:AAPP_RHILV (SWALL:Q52815) (257 aa) fasta scores: E(): 8.6e-70, 75.1% id in 245 aa, and to Escherichia coli hypothetical amino-acid ABC transporter ATP-binding protein yhdz yhdz or b3271 SWALL:YHDZ_ECOLI (SWALL:P45769) (252 aa) fasta scores: E(): 7.3e-81, 85.77% id in 253 aa.
 
 0.827
glnQ
Similar to Escherichia coli glutamine transport ATP-binding protein GlnQ or b0809 SWALL:GLNQ_ECOLI (SWALL:P10346) (240 aa) fasta scores: E(): 6.2e-76, 90% id in 240 aa.
 
 0.821
ECA0854
ABC transporter, ATP-binding protein; Similar to Rhizobium sp. TAL1145 mimosine transporter ATP-binding protein MidC SWALL:Q9EYT0 (EMBL:AF312768) (265 aa) fasta scores: E(): 2.7e-49, 57.55% id in 245 aa, and to Corynebacterium glutamicum ABC-type transporter, ATPase component cgl1330 SWALL:Q8NQU4 (EMBL:AP005278) (250 aa) fasta scores: E(): 1.9e-50, 59.57% id in 235 aa.
 
 0.779
ECA2970
ABC-transporter ATP-binding protein; Similar to Corynebacterium efficiens putative amino acid ABC transporter ATP-binding protein ce1443 SWALL:BAC18253 (EMBL:AP005218) (254 aa) fasta scores: E(): 1.1e-43, 57.32% id in 239 aa, and to Streptomyces coelicolor ATP-binding protein atrc or sco5258 or 2sc7g11.20C SWALL:Q9F3K7 (EMBL:AL939123) (253 aa) fasta scores: E(): 1.6e-43, 55.02% id in 249 aa.
 
 0.779
ECA4470
Similar to Yersinia pestis putative periplasmic solute-binding protein ypo4111 or y4125 SWALL:Q8Z9T4 (EMBL:AJ414160) (284 aa) fasta scores: E(): 2e-86, 83.81% id in 278 aa, and to Pseudomonas aeruginosa probable binding protein component of ABC transporter pa2204 SWALL:Q9I1R3 (EMBL:AE004647) (268 aa) fasta scores: E(): 1.6e-55, 58.77% id in 262 aa.
 
  0.775
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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